Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001483515.1_202015-12- 30] 53 sequences; 9,059,225 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq27 242 3e-59 >seq27 Length=1279890 Score = 242 bits (268), Expect = 3e-59 Identities = 581/861 (67%), Gaps = 27/861 (3%) Strand=Plus/Plus Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004 |||||||||||| |||||||||||| ||||| || ||||| |||| | ||||||| | Sbjct 168569 TTTGATATTCACCAACTCTCTTTTCGAAGAAGTTAGTTTTACCTTGAAGTGAAATAAGGT 168628 Query 16005 CCATAAAATCAAAAGGATTTTTTGAACAATAGTA--TTTATCGCATC-CCAATTCCAACA 16061 |||| ||||||||||||| ||| | ||| ||| | | || |||| | || | Sbjct 168629 CCATCCAATCAAAAGGATTA---GAAACGTTGTAGATTTTTGGAATATCCAAGGCAAAAA 168685 Query 16062 ATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCAC-AGTTCATTCCTATT 16120 ||||||||| || |||||||| ||||| || ||| || || ||||||| || || Sbjct 168686 GTAATCTATCAGCAACAAATTCAATATATTGGGCCAT-AAGTCTTGAGTTCATACCAATA 168744 Query 16121 AATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATT 16180 | | |||||| | | || | ||| ||| |||| | | ||| ||||| |||| Sbjct 168745 AGATCAACAGGAAGAGAGTCACAAAGAAAGTTTCTTTCAACTTCAACAGCTTC--TGATA 168802 Query 16181 ATATCTCTTACTACACTATTTAACGGAGGGTTTAA---TAAGTG-TTTAAACATTATACA 16236 || | || ||| ||| | | | ||||| |||| | |||| | |||| ||| Sbjct 168803 TGATTTGTTG-TACTCTAGG-AGCTGGTAATTTAAATTTAAGGGCTTTATATATTAAACA 168860 Query 16237 AGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACC 16296 |||||| ||| ||| | ||||| || | ||| || | || || |||||||| || || Sbjct 168861 AGCAAAGTCAGCATGGAGACCTTCATCACGACTAATAAGTTCATTAGAAAATGTGAGTCC 168920 Query 16297 TGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATAT 16356 ||||| ||||| |||||||||| |||||| || || ||| ||||||||| | || Sbjct 168921 AGGCATAAGTCCACGTTTTTTAAGCCAAAAAATTGCACAAAAGCTACCAGAAAATAGAAT 168980 Query 16357 ACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttctat 16416 |||||||| || ||| ||| | || ||| | | | || | | ||| || Sbjct 168981 TCCTTCAACAGCACAGAATCCAATAATTCTTTCAGCAAAAGATCGTTCAGAA--TTC-AT 169037 Query 16417 ccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAA 16476 |||||| | ||||| | |||||| | ||||||| | || | ||||| | ||| Sbjct 169038 CCATTTAGTTGCCCATTCTGCTTTCTTTTTAACAGCTTCAATATGAGAAATTGCTTCAAA 169097 Query 16477 TAAATAAttttt--ttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATT 16534 | |||| |||||| |||| |||||| |||| || ||||| ||| || Sbjct 169098 GAGC--ATTTGACGTTCTTTAATATCAGTAATATATCTATCAATAAGTAATGAATAAGTT 169155 Query 16535 TCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATT 16594 || ||| || | || || | || |||||| ||||| | ||| ||||| | |||| Sbjct 169156 TCACTATGTATTTGTTCAATAGACATTTGAAAAGCATAATACATTCTGGCTTCTGGTATT 169215 Query 16595 TGTACTTCAGAGTAA--AACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTG 16652 |||| ||| ||| || || ||||||||||||| |||| || ||||| || || | Sbjct 169216 TGTATTTCTC--TAAGGAAATTTACTGCTAAGTTTTCCATAACAATGCCATCACTTGCAG 169273 Query 16653 CAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGAAAGTTTTAACCAGT 16712 |||| || || | | || ||| ||||||| | |||| ||| ||| || ||| | Sbjct 169274 CAAAGAATGCTAAGACGTATTTGATAAAATGTCTTTCAGGGTCTTTAAGACTTTCCCAAT 169333 Query 16713 CAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTTT 16772 | | ||||| || ||| | |||||| | |||||| || || |||| |||| Sbjct 169334 CTCTAGTATCTTGACTTAGATCAATCTCTTCAGTAACCCAAAATGATGCTTCAGCTTTTT 169393 Query 16773 TATACATTTTCCATATGTCTT 16793 |||||||| ||| || |||| Sbjct 169394 TATACATTGACCAAATATCTT 169414 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462511693585800