Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001483515.1_202015-12- 30] 53 sequences; 9,059,225 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq27 365 4e-96 >seq27 Length=1279890 Score = 365 bits (404), Expect = 4e-96 Identities = 1222/1871 (65%), Gaps = 58/1871 (3%) Strand=Plus/Minus Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849 || ||||| |||| ||| || || || || || |||| |||||| || || ||| Sbjct 447521 TCTACTGTAAATTGTATGGGGCGTGTCGCGCTTTGGGTCCTCAAATAATAAATGCCTGTT 447462 Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTA 36909 ||||| || | |||| || |||||||||||| | | ||||| | ||| ||| Sbjct 447461 TTTAGACCTTTTTTCCAACCATAAAAATGCATAGATGATAACTTTGCAAAGTTAGCATTT 447402 Query 36910 TCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATT 36969 || |||| || ||| ||||| |||| | | | | ||| || || || ||||| Sbjct 447401 TCCATATGGATGTTCAAAGATTGCGATTGACAAACATATGGACCCCTATCTGCAGCCATA 447342 Query 36970 TCTAAAATACATTTTTGAGAT--ATCTCCCAAACCGTTTTATATATTTGTTTTATATTAT 37027 || || ||| | || | | || ||||| || || ||||| | | ||||| | Sbjct 447341 TC--AATTACTGTCTTTTGCTTGATTTCCCATACAGTCTTATAAAGCTCACGTATATCCT 447284 Query 37028 CTGGTAAATCTAA----ATGTTGAATAGAACCATTATGTAACACAATTGTATTCT--TTA 37081 | || || | ||| || ||||||| ||||||| | |||| |||||| ||| Sbjct 447283 CCGG-AATTGTAAGTATATTTTGAATACTGCCATTATTTG---CAATAATATTCTGTTTA 447228 Query 37082 TGTCATTATTCCACATATTTCTA-CT-TATTAGTTCTCTCAATAGGTGTGGATTTACAAC 37139 | | | ||| |||| | | || || || || | | | ||| |||||||| || Sbjct 447227 AGCCTATCATCC-CATAACCCAAGCTCTAGTAAATCATTTAGCAAGTGCGGATTTACTAC 447169 Query 37140 CTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGA 37199 || || ||||||| ||| || | ||| || || || |||| |||| Sbjct 447168 AAAGAACTCACCAGATAGTACCCTACGATGATAAATGTTCGAGGTGAATGGCTCAAAACT 447109 Query 37200 CTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCT 37259 |||||| |||| ||| ||||| || || ||||| || |||||||| | ||| | || Sbjct 447108 CTCATTGTTACCTAAAATTTGTGAAGTGGATGCTGTTGGCATTGGAGATATCAATAGAGA 447049 Query 37260 ATTTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGT 37319 ||| | | |||| | | ||| || | ||| || || |||||| || || || Sbjct 447048 ATTACGAATACCATATTTGGAAATCCTATCTTTAAGCGAATCCCAATCACA-AAGTCCAG 446990 Query 37320 TGGGTTCTTTAAC----CACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGT 37375 | | | |||| ||||||||| |||||| |||||| |||||||| || ||| || Sbjct 446989 AGTCTGGTGTAACTCCCCACATATCAAATTGTAAAATACCCTTACTCGCAGGCGAACCGG 446930 Query 37376 TATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCAT 37435 |||||| || || || || || ||| || || || || |||| || || || |||| Sbjct 446929 AATATGTTTCGTATGGACCATATTTTTCTGCAAGCTCACAGCTAGCATCGAGAGCTGCAT 446870 Query 37436 AATATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATG-CA 37494 |||| || ||| || |||||| ||||||| | || ||| | || ||| ||| || Sbjct 446869 AATAGATAACTTCAAAGATTTGTTTATTTAACTTCTTAGCTCCCTCAGACTCGTATGGCA 446810 Query 37495 TAGCCCAATAAT-ATAAACACA-TCAGCCAAACCCTGAACACCGATACCTATGGGTCTAT 37552 || | || || || || ||| || || | || |||| || || || | || | || Sbjct 446809 TA--CGAAGCATCATGAA-ACAGTCTGCGAGCCCTTGAATGCCAATCCCCAATGGACGAT 446753 Query 37553 GTTTCTTATTAGA-TCTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTA 37611 || | ||| || | | || ||||| | | | |||||| | || || | |||| Sbjct 446752 GTCTTAAATTCGAGTTTTTAC-ATTCTTTAAGAGAATAATATCCAACGTCAATCAATTTA 446694 Query 37612 TTTAGATTTTTAACTAGTATT----TTCGTAATTATTCTCAACTTGTCGAACATAAATAC 37667 || | ||| || ||| | ||||||| | | | ||||| || || || || || Sbjct 446693 TTCAAATTC----CTCGTAATCACCTTCGTAACTTCTTTTAACTTATCAAA-ATCAA-AC 446640 Query 37668 GT--------TATTATTAACAAATTTACTCAACGAAATAGATCCTAGATTACATACAGCA 37719 || | |||| ||| || || | |||||| | |||||||| || ||| Sbjct 446639 GTCTTGTTATTTTTATCAACGAACTTTGGAAGGCCAATAGACGCCAGATTACAAACGGCA 446580 Query 37720 ACTTCATCTTCGTTACTAAATTGTATAATCTCTGTACAGAGATTACTCGATCTAATTGTT 37779 ||||| || | | || | ||| ||| || ||||| || | ||||| || ||| ||| Sbjct 446579 ACTTCGTCCTTGCTAGTGTATTCTATGATTTCTGTGCATAAGTTACTTGAAACAATAGTT 446520 Query 37780 CCCAAATTGCTTTGATTGGATTTTTTATTACAAGAATCTTTATATAGTATATACGGCGTT 37839 |||||||| | || || ||| |||| || ||||||||| ||| | || || Sbjct 446519 CCCAAATTTTTCTGGTTACTTTTGCTATTTGCAGCATCTTTATAACAAATAAATGGTGTC 446460 Query 37840 CCTTGTTCTATTTGAGCCTCGATAATAGATTTCCATAAACTTCTT-GCTTTAACGATCGC 37898 || || |||||||||| | || | ||| || |||| ||||| | ||| Sbjct 446459 CCCGTCTCAATTTGAGCCTGTAAGATTAAGAACCA-AAGTTTCTGCGCTTTCA---TCGT 446404 Query 37899 TTTAAttttttt-CTTTGTTTCGTATTCTAT--ATATAATTTGTTAAAATCATTCCCCCA 37955 ||| || | ||||||| || || | ||||| || |||||||||| ||||| Sbjct 446403 TTTCCTTCCACGGCCTTGTTTCTCATACTCTTCATATAGCTTCTTAAAATCATCGCCCCA 446344 Query 37956 TACATCGCATAATCCTGGACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTC 38015 ||||| ||||| ||||| ||| |||||||||| ||| |||| ||| || || Sbjct 446343 AACATCTTGCAATCCCCTGCATTCATCTGGGCACATTAGAGTCCAATCTTGATCCTTCTC 446284 Query 38016 TACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATA 38075 || | |||||| || | |||||| ||||| | |||| ||| | ||| ||| Sbjct 446283 AACTCTTTCCATGAACAGATCAGGAACCCAAAGGGCAGGAAAGAGATCGCGACATCTCAT 446224 Query 38076 TTCTTCGTTCCCTACATTCTTTCTTAAGCTTAGAAAATCGAATATATCAGCGTGCCATGG 38135 ||||| || || |||||| || | | ||| || | | |||| |||||||||| Sbjct 446223 CTCTTCCTTTCCATGATTCTTCCTAATTTCAATAAACTCTACAACATCAACGTGCCATGG 446164 Query 38136 TTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAAC 38195 ||| | |||||| | || || ||| | || | || || |||| |||||| ||| | Sbjct 446163 TTCCAAATAAATTGCAATGGCACCTTTACGCTTCCCTCCACCTTGATCAATATACCTAGC 446104 Query 38196 TGTGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGA 38255 |||| |||||| | | | ||| || | || ||||||||| | || ||| | || Sbjct 446103 AGTGTCATTATAAACGCGCAGCATCGGAATTAATCCATTAGATCTCCCATTTGTTCCTCG 446044 Query 38256 TATATAAGTACCCTTAGCTCGTATATTACTTATCGACAATCCTATTCCACCTGCATGTTT 38315 ||||| | ||| | ||| |||||||||| | || || | ||||||||| || | Sbjct 446043 AATATATGAACCAGTTCCTCTAATATTACTTACTGCCACCCCAAGGCCACCTGCA-GTCT 445985 Query 38316 TGATATTAAA-GCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTA 38374 | || | ||||||| ||| || ||||| ||||| | ||| || || | Sbjct 445984 TACTAATGTTTGCGCATTTAGTTAGTGTGTCAAAGATACCGTTTATTGAATCTTCTGGAA 445925 Query 38375 TTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAG 38434 | |||| ||||||| ||||||||||| || || || | ||||| | ||| | Sbjct 445924 TCCTGAGTAAAAAACAAGATGACATTTGAGGTCGCGGCGTGCCTGAATTAAAGAGTGTGG 445865 Query 38435 GAGATGCATGTATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTA 38494 | | |||||| | || |||||| ||| || | | ||||||||| | | || | || | Sbjct 445864 GTGTTGCATGAGTAAAATATTTTTGCGATAACAACTCATATGTTTCAAGTGCAGCTTCAA 445805 Query 38495 TATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTATTA 38554 ||||||| | |||||||| ||| |||| ||| || | ||||||||||||||| | | Sbjct 445804 TATCACCACAATGAATACCACAAGAAACCCGCATCAGAAGATGTTGTGGTCTTTCCACAA 445745 Query 38555 TTTTATTATTCTGTTTAAGTAGATACGATTTTTCTAATGTTTTTATTCCAAAATAACTAT 38614 ||| || | |||||| ||||| ||| |||||| ||||| | |||||||| || Sbjct 445744 CTTTGTTGTCAATTTTAAGAAGATAGGATCTTTCTAGAGTTTTGAAGGCAAAATAATCAT 445685 Query 38615 ATGAATAATCT 38625 || | ||||| Sbjct 445684 ATTCAAAATCT 445674 Score = 219 bits (242), Expect = 4e-52 Identities = 592/878 (67%), Gaps = 46/878 (5%) Strand=Plus/Plus Query 11340 TTTGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTCTAGTGATATATACT 11399 |||||||||||| ||||| |||||| || ||||| ||||||| ||||| ||| | Sbjct 168569 TTTGATATTCACCAACTCTCTTTTCGAAGAAGTTAGTTTTACCTTGAAGTGAAATAAGGT 168628 Query 11400 CCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAACTCTGTTAATA 11459 |||| | |||||||||| | || ||| ||| |||| | | | || | | || Sbjct 168629 CCATCCAATCAAAAGGATTAGAAACGTTGTAGATTTTTGGAATATCCAAGGCAAAAAGTA 168688 Query 11460 ATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAGAT 11519 ||||||| || || ||||| ||||| || | ||| | | | |||||||| ||||||| Sbjct 168689 ATCTATCAGCAACAAATTCAATATATTGGGCCATAAGTCTTGAGTTCATACCAATAAGAT 168748 Query 11520 CCACCGGAATAGCAACTGTCAAA--AACTCCTTTTCTATATTAACCGCATCAATGATTAT 11577 | || |||| || | | |||| || | |||| | | ||| || || |||| || Sbjct 168749 CAACAGGAAGAG--AGTCACAAAGAAAGTTTCTTTCAACTTCAACAGCTTC--TGAT-AT 168803 Query 11578 CGAC--GTTATAACTTCCTTAGATGGTGGATGTAA---TAAATG-TTTAAACATTAAACA 11631 || ||| || || || |||| || ||| ||| | |||| | |||||||| Sbjct 168804 -GATTTGTTGTA-CTCTAGGAGCTGGTA-ATTTAAATTTAAGGGCTTTATATATTAAACA 168860 Query 11632 CGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCC 11691 ||||| ||| ||| | |||||| || | ||| || ||||||||||||||||| | ||| Sbjct 168861 AGCAAAGTCAGCATGGAGACCTTCATCACGACTAATAAGTTCATTAGAAAATGTGAGTCC 168920 Query 11692 GGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATAT 11751 ||||| | ||| |||||||| | |||||| || ||| ||| ||||||||| | || Sbjct 168921 AGGCATAAGTCCACGTTTTTTAAGCCAAAAAATTGCACAAAAGCTACCAGAAAATAGAAT 168980 Query 11752 TCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTTGTTGCTAGAT-ATCC 11810 ||| || ||||| ||| | | | |||||| || | | | ||| | | |||| Sbjct 168981 TCCTTCAACAGCACAGAATCCAATAATTCTTTCAGCA-AAAGATCGTTCAGAATTCATCC 169039 Query 11811 ATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATA 11870 |||| | ||||| || ||||||||||| || ||| || || || | ||| | Sbjct 169040 ATTTAGTTGCCCATTCTGCTTTCTTTTTAACAGCTTCAATATGAGAAATTGCTTCAAAGA 169099 Query 11871 AATGCATTT---TTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTT 11927 |||||| |||| || |||| | | |||| |||| || | ||| ||| ||| Sbjct 169100 ---GCATTTGACGTTCTTTAATATCAGTAATATATCTATCAATAAGTAATGAATAAGTTT 169156 Query 11928 CTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACA-TCGTGCCTCTGAACAC 11986 | ||| || | ||| |||| |||||||| |||| | ||| || || |||| Sbjct 169157 CACTATGTATTTGTTCAATAGACATTTGAAAAGCATA-ATACATTCTGGCTTCTGGTATT 169215 Query 11987 TGTACATC-CACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGC 12045 |||| || | | |||| || | ||||| || || | ||||| |||||||| | || Sbjct 169216 TGTATTTCTCTAAGGAAAT-TTACTGCTAAGTTTTCCATAACAATGCCATCACTTGCAGC 169274 Query 12046 AAAAAATGCTAGTATATGTTTTATAAAGTATTTTTC---GTCTTTAGTTAATTTATCCCA 12102 ||| ||||||| | | ||| ||||| | | |||| ||||||| | | ||||| Sbjct 169275 AAAGAATGCTAAGACGTATTTGATAAAATGTCTTTCAGGGTCTTTA---AGACTTTCCCA 169331 Query 12103 ATCATCTA-AATCT----TTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACT 12157 ||| |||| |||| || ||| ||||| |||| ||| |||||| ||| | Sbjct 169332 ATC-TCTAGTATCTTGACTTAGATCAATCT-CTTCAGTAAC---CCAAAATGATGCTTCA 169386 Query 12158 GATTGTTTATACATTTTCCAGATATCATGATACTTAAT 12195 | || |||||||||| ||| ||||| | || ||||| Sbjct 169387 GCTTTTTTATACATTGACCAAATATCTT--TAATTAAT 169422 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468524489602320