Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001483515.1_202015-12- 30] 53 sequences; 9,059,225 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq27 165 1e-35 >seq27 Length=1279890 Score = 165 bits (182), Expect = 1e-35 Identities = 904/1414 (64%), Gaps = 50/1414 (4%) Strand=Plus/Plus Query 111604 TGGAAACCCCACAGTACATGTTC--ATGCGGGTCGCGATCGGTATCCATGGGGAAGATAT 111661 |||||| ||||| |||| ||| |||||||| | ||||| ||| | | ||||| Sbjct 445748 TGGAAAGACCACA--ACATCTTCTGATGCGGGTTTCTTGTGGTATTCATTGTGGTGATAT 445805 Query 111662 TGATTCTGTTTTGGAGACATACGACAAGATGTCCCGTGG-TATGTTCATCCACGCAACAC 111720 ||| ||| | || ||||| || | | || | ||| || || | ||||||| Sbjct 445806 TGAAGCTGCACTTGAAACATATGAGTTGTTATCGCAAAAATATTTTACTC-ATGCAACAC 445864 Query 111721 CAACCCTCTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATT--GC 111778 | || ||||| || | || || || |||| |||||||| |||||| ||| | | Sbjct 445865 CCACACTCTTTAATTCAGGCACGCCGCGACCTCAAATGTCATCTTGTTTT-TTACTCAGG 445923 Query 111779 AAACAAGGAGGATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTC 111838 | | || || ||||||| || || || | | ||| || ||| |||| || | || Sbjct 445924 ATTCCAGAAG-ATTCAATAAACGGTATCTTTGACACACTAACTAAATGCGCAAACATTAG 445982 Query 111839 AAAGTGGGCTGGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGT-CTCGTA 111897 ||| || ||||| | ||| || | | || | |||| ||| || | || Sbjct 445983 TAAGACTGCAGGTGGCCTTGGGGTGGCAGTAAGTAATATTAGAGG-AACTGGTTCATATA 446041 Query 111898 TTAGAGGTACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCA 111957 || |||| |||||||| ||| |||| | ||||| ||||| ||||| | ||| | || Sbjct 446042 TTCGAGGAACAAATGGGAGATCTAATGGATTAATTCCGATGCTGCGCGTTTATAATGACA 446101 Query 111958 CAGCGCGCTATGTAAACCAAGCTGGGCGT---CGCAAGGGATCTATCGCAGTCTATCTTG 112014 | || | ||| | | |||| ||| | || || || | || ||| | ||| | | Sbjct 446102 CTGCTAGGTATATTGATCAAGGTGGAGGGAAGCGTAAAGGTGCCATTGCAATTTATTTGG 446161 Query 112015 AGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGG 112074 | |||||||||| ||| | | ||||| |||| | | || || || | || | Sbjct 446162 AACCATGGCACGTTGATGTTGTAGAGTTTATTGAAATTAGGAAGAATCATGGAAAGGAAG 446221 Query 112075 AGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAG 112134 || | | || ||||||||||| | || || ||| |||| ||||| |||||| | |||| Sbjct 446222 AGATGAGATGTCGCGATCTCTTTCCTGCCCTTTGGGTTCCTGATCTGTTCATGGAAAGAG 446281 Query 112135 TTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGA-CAAGGCACCCGGTCTCTCCGAT 112193 ||||| || | ||||| |||| | || ||||| || ||| || | ||| Sbjct 446282 TTGAGAAGGATCAAGATTGGACTCTAATGTGCCCAGATGAATGCA-GGGGATTGCAAGAT 446340 Query 112194 GCCGTGGGTGAGGAGTTT--GAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGA 112251 | ||| || || ||| |||| || || | |||| ||| || || | || | | Sbjct 446341 GTTTGGGGCGATGATTTTAAGAAG--CTATATGAAGAGTATGAGAAACAAGGCCGTGGAA 446398 Query 112252 CTGCGACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCA-AGTCTCAAACCGAGACT 112310 ||| || ||| || || | | || ||| | || |||||| ||||| Sbjct 446399 GGAAAACGATGAAAGC-GCAGAAACTTTGGTTCTTAATCTTACAGGCTCAAATTGAGACG 446457 Query 112311 GGTACACCATATATGCTTTACAAAGACGCCTGTAACCA-AAAGAGTAATCAAAAGAATTT 112369 || ||||||| ||| ||| ||||| | ||| || | || ||||| || || ||||| Sbjct 446458 GGGACACCATTTATTTGTTATAAAGATG-CTGCAAATAGCAAAAGTAACCAGAAAAATTT 446516 Query 112370 GGGTGTGATCAAGAGTTCC----AACCTCTGTACAGAAATCTTGGAATTTACAGACAAAG 112425 || || | | ||| | ||| | || ||||||||| | |||| || ||| | Sbjct 446517 GG----GAACTATTGTTTCAAGTAACTTATGCACAGAAATCATAGAATACACTAGCAAGG 446572 Query 112426 ATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGA 112485 | || || || ||||| || || || || | || || |||| || ||| | | | Sbjct 446573 ACGAAGTTGCCGTTTGTAATCTGGCGTCTATTGGCCTTCCAAAGTTCGTTGATAAAAATA 446632 Query 112486 CAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAA 112545 ||||| ||||||| ||| || | | ||||||||||| | || | || | | Sbjct 446633 ACAAGACGTTTGATTTTGATAAGTTAAAAGAAGTTACGAAGGTGATTACGAGGAATTTGA 446692 Query 112546 ACAGAGTTATTGA---TAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGA 112602 | | | | ||||| | || ||| || | | | ||| || | || || ||| | | Sbjct 446693 ATAAATTGATTGACGTTGGATATTATT--CTCTTAAAGAATG-TAAAAACTCGAATTTAA 446749 Query 112603 GACACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGA-TGTATTCATTCTTTGTCGC 112661 |||| |||||| | || | || | ||||| ||||| || ||| ||||| | ||| Sbjct 446750 GACATCGTCCATTGGGGATTGGCATTCAAGGGCTCGCAGACTGT-TTCATGATGCTTCGT 446808 Query 112662 CACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTAT 112721 ||| || || || | ||| ||| | | ||| | || ||||| || ||| Sbjct 446809 ATGCCATACGAGTCTGAGGGAGCTAAGAAGTTAAATAAACAAATCTTTGAAGTTATCTAT 446868 Query 112722 CACGCCGCTCTTGAGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTT 112781 | || ||||| || || || | ||| | ||||| |||||||||| ||||| | | Sbjct 446869 TATGCAGCTCTCGATGCTAGCTGTGAGCTTGCAGAAAAATATGGTCCATACGAAACATAT 446928 Query 112782 GAGGGTTCTCCAGCTTCACAAGGGGTGCTT--CAATTTGATATGTGGGAAGGTGAGACCA 112839 ||||| || || | | |||| || |||||||||||||||| | || | |||| Sbjct 446929 TCCGGTTCGCCTGC--GAGTAAGGGTATTTTACAATTTGATATGTGGGGA-GTTACACCA 446985 Query 112840 AGCT----TCACTACGACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGT 112895 || | | || ||||| | || || || | || | | ||| ||||| Sbjct 446986 GACTCTGGACTTTGTGATTGGGATTCGCTTAAAGATAGGATTTCCAAATATGGTATTCGT 447045 Query 112896 AACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAAT 112955 || ||| ||||| | |||||||||||||| ||||| ||||||| || ||||| ||| Sbjct 447046 AATTCTCTATTGATATCTCCAATGCCAACAGCATCCACTTCACAAATTTTAGGTAACAAT 447105 Query 112956 GAATGCTTTGAACCCTACACGACGAACATCTATC 112989 || | ||||| || | ||| ||||||| |||| Sbjct 447106 GAGAGTTTTGAGCCATTCACCTCGAACATTTATC 447139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620741988758160