Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001483515.1_202015-12- 30] 53 sequences; 9,059,225 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq27 145 9e-30 >seq27 Length=1279890 Score = 145 bits (160), Expect = 9e-30 Identities = 831/1304 (64%), Gaps = 42/1304 (3%) Strand=Plus/Minus Query 105933 GATAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGG 105992 |||| ||||||| ||| | || ||||| | ||||| ||||| || ||||||| |||| Sbjct 447139 GATAAATGTTCGAGGTGAATGGCTCAAAACTCTCATTGTTACCTAAAATTTGTGAAGTGG 447080 Query 105993 AGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTT 106052 | |||||||||||||| | ||||| ||| ||||||| ||| | || || | | Sbjct 447079 ATGCTGTTGGCATTGGAGATATCAATAGAGAATTACGAATACCATATTTGGAAATCCTAT 447020 Query 106053 CCTTGAGAACATCCCAGT--CGTAGT--TGAGCTTGGTTTCACCTTCCCACATATCAAAT 106108 | || || |||||| | | ||| ||| |||| | | || |||||||||||||| Sbjct 447019 CTTTAAGCGAATCCCAATCACAAAGTCCAGAGTCTGGTGT-AACTCCCCACATATCAAAT 446961 Query 106109 TGAAGCACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCA 106168 || | | || | || || ||||| | |||| || || | ||| | ||| Sbjct 446960 TGTAAAATACCCTTACTCGCAGGCGAACCGGAATATGTTTCGTATGGACCATATTTTTCT 446901 Query 106169 GCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTC 106228 || | |||||||| || || || | ||| | ||| || ||||||||| | ||| Sbjct 446900 GCAAGCTCACAGCTAGCATCGAGAGCTGCATAATAGATAACTTCAAAGATTTGTTTATTT 446841 Query 106229 ATCTCCTTGGCTTCATCTGAATCAAAT-GCGTAGCGGCACAAAATAAATACA-TCCGCGA 106286 | || ||| ||| | || || || || || || || || || || ||| || |||| Sbjct 446840 AACTTCTTAGCTCCCTCAGACTCGTATGGCATA-CGAAGCATCATGAA-ACAGTCTGCGA 446783 Query 106287 GACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAA 106346 | ||||||| || | || | || | |||| | ||| || ||| || ||| | Sbjct 446782 GCCCTTGAATGCCAATCCCCAATGGACGATGTCTTAAATTCGAGTTT-TTACATTCTTTA 446724 Query 106347 CGGGATAAAAATTTC---TGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGA 106403 || || ||| || |||||| | | || | ||| | |||| | ||| || | Sbjct 446723 --AGAGAATAATATCCAACGTCAATCAATTTATTCAAATTCCTCGTAATCACCTTCGTAA 446666 Query 106404 TTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGG 106463 ||| | | || ||| ||||||| || | | || || || ||||||||||| Sbjct 446665 CTTCTTTTAACTTATCAAAATCAAACGTCTTGTTATTTTTATCAACGAACTTTGGAAGGC 446606 Query 106464 CGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTG 106523 | || || |||| ||| ||||| || || ||||| ||||| |||| ||||||| Sbjct 446605 CAATAGACGCCAGATTACAAACGGCAACTTCGTCCTTGCTAGTGTATTCTATGATTTCTG 446546 Query 106524 TACACAAG----TTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTT-TTTGTT 106578 | || ||| ||| ||| ||| || |||||||| || |||||||| || | || Sbjct 446545 TGCATAAGTTACTTGAAAC----AATAGTTCCCAAATTTTTCTGGTTACTTTTGCTATTT 446490 Query 106579 GCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGC 106638 ||| ||||| || || || | || ||||||||||| | || | || | ||| Sbjct 446489 GCA-GCATCTTTATAACAAATAAATGGTGTCCCCGTCTCAATTTGAGCCTGTAAGATTAA 446431 Query 106639 CTTCCACA-CATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTG 106697 ||| | || ||| | | | | || | || || | ||| |||| | Sbjct 446430 GAACCAAAGTTTCTGCGCTTTCATCGTTTTCCTT-CCACGGCCTTGTTTCTCATACTCTT 446372 Query 106698 TGTAGAGGGCTTC--AAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTT-GTCTG 106754 || | ||||| ||| || || ||| | || | | | ||| || |||| Sbjct 446371 CATATA--GCTTCTTAAAATCATCGCCCCAAACATC-TTGCAATCCCCTGCATTCATCTG 446315 Query 106755 GACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCC 106814 | || | |||| ||| | | ||| |||||| | | |||||| || || |||| || Sbjct 446314 GGCACATTAGAGTCCAATCTTGATCCTTCTCAACTCTTTCCATGAACAGATCAGGAACCC 446255 Query 106815 ACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAA-C 106873 | |||| | ||||||||| | ||| | |||||| | || || || || ||| Sbjct 446254 AAAGGGCAGGAAAGAGATCGCGACATCTCATCTCTTCCTTTCCATGATT-CTTCCTAATT 446196 Query 106874 TCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTT 106933 |||| ||||| | | ||| |||||||||| || | ||| | ||| || | || || Sbjct 446195 TCAATAAACTCTACAACATCAACGTGCCATGGTTCCAAATAAATTGCAATGGCACCTTTA 446136 Query 106934 CG---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGA 106990 || | ||| |||||| | ||| | || ||| | ||| | ||||| ||||| ||| Sbjct 446135 CGCTTCCCTCCACCTTGATCAATATACCTAGCAGTGTCATTATAAACGCGCAGCATCGGA 446076 Query 106991 ATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCA 107050 || | |||| ||| |||||||| || |||||| || | | |||| | || | Sbjct 446075 ATTAATCCATTAGATCTCCCATTTGTTCCTCGAATATATGAACCAGTTCCTCTAATATTA 446016 Query 107051 TGGATGTGCATCCCAATACCCCCAGCCCACTT--TGAGATTTGCGCACACTCCGTAAGAG 107108 | || ||||| || || || ||| | | |||||| || | || || | Sbjct 446015 CTTACTGCCACCCCAAGGCCACCTGCAGTCTTACTAATGTTTGCG--CATTTAGTTAGTG 445958 Query 107109 TTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCT 107168 | || |||||||||| ||||| || || | || | || ||| ||||| | Sbjct 445957 TGTCAAAGATACCGTTTATTGAATCTTCTGGAATCCTGAGTAAAAAACAAGATGACATTT 445898 Query 107169 GCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGA 107212 | |||| || || || | ||| ||||| || |||||||| ||| Sbjct 445897 GAGGTCGCGGCGTGCCTGAATTAAAGAGTGTGGGTGTTGCATGA 445854 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589980409137720