Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001483515.1_202015-12- 30] 53 sequences; 9,059,225 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq27 282 5e-71 >seq27 Length=1279890 Score = 282 bits (312), Expect = 5e-71 Identities = 1206/1897 (64%), Gaps = 52/1897 (3%) Strand=Plus/Minus Query 47019 AAATAATACATACCAGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAAT 47078 |||||||| || || || |||| |||| |||| ||||| ||||||||| | ||| Sbjct 447479 AAATAATAAATGCCTGTTTTTAGACCTTTTTTCCAACCATAAAAATGCATAGATGATAAC 447420 Query 47079 TTAGAATAACTAGGTTCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCA 47138 || | | | ||| | | ||||| || || | |||||| ||| || | ||| | Sbjct 447419 TTTGCAAAGTTAGCATTTTCCATATGGATGTTCAAAGATTGCGATTGACAAACATATGGA 447360 Query 47139 CCTCTATCAGCTGCCATATCTAAAATAACCCT-TTGTGGT--ATCTCCCATACTGTTTTA 47195 || ||||| || |||||||| ||| || | || || | || |||||||| || ||| Sbjct 447359 CCCCTATCTGCAGCCATATC---AATTACTGTCTTTTGCTTGATTTCCCATACAGTCTTA 447303 Query 47196 TAAATTTGTTTAATGTCTTCTGGGAGATTAG---TATTTTGAATAGATCCTCCgttttct 47252 |||| | || || || || | || ||||||||||| || ||| | Sbjct 447302 TAAAGCTCACGTATATCCTCCGGAATTGTAAGTATATTTTGAATACTGCCATTATTTGCA 447243 Query 47253 ataattttgttttttaat---tcatt---tgaccaaagttttcgttcagttaatgttttt 47306 ||||| || | ||| | |||| | ||| ||| | | ||| ||| ||| Sbjct 447242 ATAATATTCTGTTTAAGCCTATCATCCCATAACCCAAGCTCT-----AGTAAATCATTTA 447188 Query 47307 aaAAGATGAGGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTA 47366 ||| || ||||| || | || || ||||||||||| ||||| ||| || || Sbjct 447187 GCAAG-TGCGGATTTACTACAAAGAACTCACCAGATAGTACCCTACGATGATAAATGTTC 447129 Query 47367 CTTGTATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGC 47426 || |||| || | | ||||| || || |||||||| | ||| |||||||| ||| Sbjct 447128 GAGGTGAATGGCTCAAAACTCTCATTGTTACCTAAAATTTGTGAAGTGGATGCTGTTGGC 447069 Query 47427 ATGGATGCAACTAATAAGCTATTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGT 47486 || | | | |||| ||| | | |||||||| ||| Sbjct 447068 ATTGGAGATATCAATAGAGAATTACGAATACCATATTTGGAAATCCTATCTTTAAGCGAA 447009 Query 47487 TTCCAATCCCAAAGATCTGA---TGGAACAACATTCCAAAAATCATATTGAAGAATTCCT 47543 | |||||| ||||| | || ||| ||| ||| | |||| |||| | ||| || Sbjct 447008 TCCCAATCACAAAGTCCAGAGTCTGGTGTAACTCCCCACATATCAAATTGTAAAATACCC 446949 Query 47544 TTACTTATCGGAGAACCATTATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAA 47603 ||||| || ||||| |||||||| || ||||| ||| || || || ||||| Sbjct 446948 TTACTCGCAGGCGAACCGGAATATGTTTCGTATGGACCATATTTTTCTGCAAGCTCACAG 446889 Query 47604 CTTGCTTCCAATGCACTATAATATATTGTTTCAAATATTTTTATGTTTAGATTCCTTGCT 47663 || || || | || |||||| || |||||| |||| | | |||| ||| | ||| Sbjct 446888 CTAGCATCGAGAGCTGCATAATAGATAACTTCAAAGATTTGTTTATTTAACTTCTTAGCT 446829 Query 47664 TCTGATGATTCAAAAGG-ATANNNNNNNNNNNNNAATGTATCTGCCAATCCTTGAACACC 47722 | || || | || ||| || ||||| | ||||||| || Sbjct 446828 CCCTCAGACTCGTATGGCATACGAAGCATCATGAAACAG-TCTGCGAGCCCTTGAATGCC 446770 Query 47723 AATACCAATTGGTCTATGAGTTTTATTAGAAAACTCAGCTTCTGGTAATGGATATTTGTT 47782 ||| || | ||| | ||| || ||| || | | |||| | | ||| | Sbjct 446769 AATCCCCAATGGACGATGTCTTAAATTCGAGTTTTTACATTCTTTAAGAGAATAATATCC 446710 Query 47783 TATATCTATAATTTTATTTAGANNNNNNNNNNNNNNNNNNACAATTTCTCTTAATTTATT 47842 | || || | |||||| | | || |||| |||| |||| Sbjct 446709 AACGTCAATCAATTTATTCAAATTCCTCGTAATCACCTTCGTAACTTCTTTTAACTTATC 446650 Query 47843 AAAATCAAAC---TTGTTATTTATAACAA---ACCTATTAAGTGCTATAGATGCTAGATT 47896 |||||||||| ||||||||| || ||| || | ||| | ||||| || ||||| Sbjct 446649 AAAATCAAACGTCTTGTTATTTTTATCAACGAACTTTGGAAGGCCAATAGACGCCAGATT 446590 Query 47897 ACATACAGCTACCTCAT--TTGGATTAGTATATTGTATTATTTCAGCACATAGATTACCA 47954 ||| || || || || | ||| |||| |||| ||| ||||| | |||| |||| Sbjct 446589 ACAAACGGCAACTTCGTCCTTGC--TAGTGTATTCTATGATTTCTGTGCATAAGTTACTT 446532 Query 47955 CATTTGATAGTACCCAAATTTTGATGATTA-TTNNNNTTGTTACATGCGTCCTTGTAAAG 48013 | ||||| |||||||||| || ||| || | || || || || || ||| Sbjct 446531 GAAACAATAGTTCCCAAATTTTTCTGGTTACTTTTGCTATTTGCA-GCATCTTTATAACA 446473 Query 48014 CATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCCAAACAGTCCTAGC 48073 ||||| ||||| || || || || |||| | | ||| | ||||| || || Sbjct 446472 AATAAATGGTGTCCCCGTCTCAATTTGAGCCTGTAAGATTAAGAACCAAAGTTTCTGCGC 446413 Query 48074 CTTTATAACAGCTCTAGCTTTATTATCATGTT---CGTATTTAGTATATAACTTCTCAAA 48130 || || | | | | | | |||| | || | ||||| ||||| ||| Sbjct 446412 TTTCATC---GTTTTCCTTCCACGGCCTTGTTTCTCATACTCTTCATATAGCTTCTTAAA 446356 Query 48131 TTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACACATCAATGACCAATC 48190 ||||| || | |||| | || || ||||||| || ||||| | | |||||| Sbjct 446355 ATCATCGCCCCAAACATCTTGCAATCCCCTGCATTCATCTGGGCACATTAGAGTCCAATC 446296 Query 48191 CTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATAAATAAATC 48250 | ||| || | ||||| ||| || | ||| || | |||||| || ||| | ||| Sbjct 446295 TTGATCCTTCTCAACTCTTTCCATGAACAGATCAGGAACCCAAAGGGCAGGAAAGAGATC 446236 Query 48251 CCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATC 48310 | | ||| | ||||| || ||| |||| | ||| ||||| ||| || | | ||| Sbjct 446235 GCGACATCTCATCTCTTCCTTTCCATGATTCTTCCTAATTTCAATAAACTCTACAACATC 446176 Query 48311 AGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATC 48370 | | ||||||||||| ||||| ||||| || ||||| || || || |||||||| Sbjct 446175 AACGTGCCATGGTTCCAAATAAATTGCAATGGCACCTTTACGCTTCCCTCCACCTTGATC 446116 Query 48371 TATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGATATACC 48430 ||||| || ||||| | |||||||| | | ||| || | | ||||| ||| | || Sbjct 446115 AATATACCTAGCAGTGTCATTATAAACGCGCAGCATCGGAATTAATCCATTAGATCTCCC 446056 Query 48431 ATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAAATACCTATACC 48490 ||| ||||| |||||| ||| | |||| |||||||| | || | || | || Sbjct 446055 ATTTGTTCCTCGAATATATGAACCAGTTCCTCTAATATTACTTACTGCCACCCCAAGGCC 445996 Query 48491 ACCTGCCATTTTA--GATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATA 48548 |||||| | ||| || || | ||| ||| || || ||| | || || | ||| Sbjct 445995 ACCTGCAGTCTTACTAATGTTTGCGCATTTAGTT--AGTGTGTCAAAGATACCGTTTATT 445938 Query 48549 CTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAA 48608 ||| ||| || | | || ||||||| |||||||| || | || |||||| Sbjct 445937 GAATCTTCTGGAATCCTGAGTAAAAAACAAGATGACATTTGAGGTCGCGGCGTGCCTGAA 445878 Query 48609 TTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCA 48668 ||||| | ||| || | ||||||| |||| |||| | |||||||| | |||||||||| Sbjct 445877 TTAAAGAGTGTGGGTGTTGCATGAGTAAAATATTTTTGCGATAACAACTCATATGTTTCA 445818 Query 48669 ATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAACATATATTGA 48728 | ||| || ||||| | ||| ||||| ||| || ||||| | | || ||| Sbjct 445817 AGTGCAGCTTCAATATCACCACAATGAATACCACAAGAAACCCGCATCAGAAGATGTTGT 445758 Query 48729 GGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAA 48788 |||||||| |||| |||||| | ||||| | |||||| ||| |||| | ||||| || Sbjct 445757 GGTCTTTCCACAACTTTGTTGTCAATTTTAAGAAGATAGGATCTTTCTAGAGTTTTGAAG 445698 Query 48789 CCAAAATAGTTGTATGAAAAGTCGTTATCATTAAT-AATTGATGAATTTATTCTTTCCTT 48847 ||||||| | ||| ||| || || | | ||| |||| |||||| |||||||| | Sbjct 445697 GCAAAATAATCATATTCAAAATC-TTTTGAAAAATCAATTTTTGAATTAATTCTTTCTCT 445639 Query 48848 ATGTTTATATACTACATCCAT-TACATTTTTTGATAT 48883 || ||| || || | ||| |||| |||||| || Sbjct 445638 AT-TTTCCATGATAAAATCATAAACATGTTTTGAAAT 445603 Score = 228 bits (252), Expect = 9e-55 Identities = 584/871 (67%), Gaps = 51/871 (6%) Strand=Plus/Plus Query 18671 TTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATT 18730 |||||||||| ||||||| ||||| ||||| |||||||| || | | ||| ||| | Sbjct 168569 TTTGATATTCACCAACTCTCTTTTCGAAGAAGTTAGTTTTACCTTGAAGTGAAATAAGGT 168628 Query 18731 CCATAAAATCAAATGGATTTTTTACATTATATAtttttttGA-ATCCTAATTCTAATAGT 18789 |||| ||||||| ||||| || || || |||||| | |||| || | || ||| Sbjct 168629 CCATCCAATCAAAAGGATTAGAAACGTTGTAGATTTTTGGAATATCC-AAGGCAAAAAGT 168687 Query 18790 AGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAAT 18849 | |||||| || ||||||| ||||||| | ||| | | ||||| || || | Sbjct 168688 AATCTATCAGCAACAAATTCAATATATTGGGCCATAAGTCTTGAGTTCATACCAATAAGA 168747 Query 18850 TTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAATA 18909 | |||||| || | || |||||| | | ||| | | || || |||||||| || Sbjct 168748 TCAACAGGAAGAGAGTCACAAAGAAAGTTTCTTTCAACTTCAACAGCTTCTGATATGATT 168807 Query 18910 GATACAACTCTATCTTCATTAGGAGGGTATAG--AAGATGTTTAAACATCAAACATGCAA 18967 | |||||| | | | | || | ||| |||| | || ||||| |||| Sbjct 168808 TGTTGTACTCTAGGAGC--TGGTAATTTAAATTTAAGGGCTTTATATATTAAACAAGCAA 168865 Query 18968 AATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCA 19027 | ||| ||| || || || || | ||| || | ||||||||||||||| | ||||||| Sbjct 168866 AGTCAGCATGGAGACCTTCATCACGACTAATAAGTTCATTAGAAAATGTGAGTCCAGGCA 168925 Query 19028 TCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGAT-CCAGAAAAGAATATACCT 19086 | ||||| | |||||| | ||| || || | | |||| | | |||||||| | || ||| Sbjct 168926 TAAGTCCACGTTTTTTAAGCCAAAAAATTGCA-CAAAAGCTACCAGAAAATAGAATTCCT 168984 Query 19087 TCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATT-ATTATGAATCCA 19145 || || || || ||| | |||||| || || ||| || | || ||||| Sbjct 168985 TCAACAGCACAGAATCCAATAATTCTTTCAGCAAAAG----ATCGTTCAGAATTCATCCA 169040 Query 19146 TTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAG 19205 ||| |||||| || || |||||||| ||| | || ||| | |||| | Sbjct 169041 TTTAGTTGCCCATTCTGCTTTCTTTTTAACAGCT---------TCAATATGAG-AAATTG 169090 Query 19206 ATACATACGCTCATCTGTA--TCTTTAACAT-----ATGCATCTATCAATAA--ACTGTA 19256 | || | | ||| || ||||||| || || |||||||||||| | || | Sbjct 169091 CTTCAAA-GAGCATTTGACGTTCTTTAATATCAGTAATATATCTATCAATAAGTAATGAA 169149 Query 19257 CA--TTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCT 19314 | |||| ||| || | ||| |||| ||| ||||| | ||| | ||| |||||| Sbjct 169150 TAAGTTTCACTATGTATTTGTTCAATAGACATTTGAAAAGCATAATACATTCTGGCTTCT 169209 Query 19315 GTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTA 19374 | ||| |||| ||| ||| || || | | || ||||| |||| || |||||||| Sbjct 169210 GGTATTTGTATTTCTCTAAGGAAATTTACTGCTAAGTTTTCCATAACAATGCCATCACTT 169269 Query 19375 GCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCA---TCTGAGGTTAATGTA 19431 || ||||| |||||||| || | ||| ||||||||| ||||| ||| |||| Sbjct 169270 GCAGCAAAGAATGCTAAGACGTATTTGATAAAATGTCTTTCAGGGTCT----TTAAGACT 169325 Query 19432 TTCC-AATCATTAATATCTT----TAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAG 19486 |||| |||| || |||||| ||||| ||||| |||| ||| |||||| || | Sbjct 169326 TTCCCAATCTCTAGTATCTTGACTTAGATCAATCT-CTTCAGTAAC---CCAAAATGATG 169381 Query 19487 CCTCTGCTTTTTTATACATGTTCCATATATC 19517 | || |||||||||||||| ||| ||||| Sbjct 169382 CTTCAGCTTTTTTATACATTGACCAAATATC 169412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562108427602920