Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001483515.1_202015-12-
30] 53 sequences; 9,059,225 total letters
Query= NC_016924.1
Length=185139
Score E
Sequences producing significant alignments: (Bits) Value
seq27 241 2e-58
>seq27
Length=1279890
Score = 241 bits (266), Expect = 2e-58
Identities = 592/886 (67%), Gaps = 45/886 (5%)
Strand=Plus/Plus
Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTC 36931
||||||||| |||||||||| ||||||| ||||||| || || || || ||||
Sbjct 168555 CATAACTCCAGCCATTTGATATTCACCAACTCTCTTTTCGAAGAAGTTAGTTTTACCTTG 168614
Query 36932 TAGTGATATATTTTCCATAAAATCAAATGGATTAGATGTATTATATATAGTACTACATGA 36991
||||| ||| ||||| ||||||| |||||||| || || || | | || |
Sbjct 168615 AAGTGAAATAAGGTCCATCCAATCAAAAGGATTAGAAACGTTGTAGATTTTTGGA-AT-A 168672
Query 36992 T--AATTCCTTCAGAAGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAG 37049
| || | || | ||||| ||||||||||| || |||| ||| ||| ||
Sbjct 168673 TCCAAGGCAAAAAGTAATCTATCAGCAACAAATTCAATATATTGGGCCATAAGTCTTGAG 168732
Query 37050 TTTATACCAATTAGTTTTACTGGAATTGCATCTTGAAGAAATAGTTTTTCTATTATTACA 37109
|| |||||||| || | || |||| | || |||||| | |||| | | |||
Sbjct 168733 TTCATACCAATAAGATCAACAGGAAGAGAGTCACAAAGAAAGTTTCTTTCAACTTCAACA 168792
Query 37110 GCATCTTTAACTATATTAACAATAACTTCTTCAGTTGGGG--GATATTTTAAATAT---- 37163
|| ||| |||| | | || | | | || | | || ||||||| |
Sbjct 168793 GCTTCTG-----ATATGA----TTTGTTGTACTCTAGGAGCTGGTAATTTAAATTTAAGG 168843
Query 37164 ---TTAAACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCA 37220
||| | | |||||| ||||| ||| ||| | ||||||||| | ||| || | ||||
Sbjct 168844 GCTTTATATATTAAACAAGCAAAGTCAGCATGGAGACCTTCATCACGACTAATAAGTTCA 168903
Query 37221 TTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAA 37280
|||||||| || | ||| ||||| | || | |||||||| |||||| ||||| |||||
Sbjct 168904 TTAGAAAATGTGAGTCCAGGCATAAGTCCACGTTTTTTAAGCCAAAAAATTGCA-CAAAA 168962
Query 37281 GAT-CCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGT 37339
| | |||||||| | ||| |||||||| || ||| | | || | | | | ||||
Sbjct 168963 GCTACCAGAAAATAGAATTCCTTCAACAGCACAGAATCCAATAATTCTTTCAGCAAAAGA 169022
Query 37340 TGAACTATAATCAGAA---ATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTC 37396
| |||||| |||||||| ||| ||| ||||| || ||||||| |||
Sbjct 169023 TCGT------TCAGAATTCATCCATTTAGTTGCCCATTCTGCTTTCTTTTTAACAGCTTC 169076
Query 37397 AATTGTTTCAATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATC 37456
||| |||||||| ||||| | | ||||| | |||| || ||||| ||||
Sbjct 169077 AATATGAGAAATTGCTTCAAAGAGCATTTGACGTTCTTTAATATCAGTAATATATCTATC 169136
Query 37457 AATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAA 37516
||| ||||| ||| ||||| || || | |||||||| || |||||| ||||| |
Sbjct 169137 AATAAGTAATGAATAAGTTTCACTATGTATTTGTTCAATAGACATTTGAAAAGCATAATA 169196
Query 37517 ACACCTAGCTTCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAAC 37576
|| ||||| | || ||| | || ||| || | ||||||||||| ||||
Sbjct 169197 CATTCTGGCTTCTGGTATTTGTATTTCTCTAAGGAAATTTACTGCTAAGTTTTCCATAAC 169256
Query 37577 TATCCCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCA---TC 37633
|| |||||||| || |||||||| || | || ||||| ||||||||||||||| ||
Sbjct 169257 AATGCCATCACTTGCAGCAAAGAATGCTAAGACGTATTTGATAAAATGTCTTTCAGGGTC 169316
Query 37634 ATTTGATAATTTTTTCCAATCATTAATATCTTTTGATAAATCAA---CTTCATCAACGGT 37690
||| | | ||| |||||| || |||||| || ||||| ||||| |||
Sbjct 169317 -TTTAAGA--CTTTCCCAATCTCTAGTATCTTGACTTAGATCAATCTCTTCAGTAAC--- 169370
Query 37691 CCAAAAACTTGCCAATGCACGTTTATACATCGTCCAAATATCATTA 37736
|||||| ||| || ||||||||| | ||||||||| |||
Sbjct 169371 CCAAAATGATGCTTCAGCTTTTTTATACATTGACCAAATATCTTTA 169416
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 592316407590120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |