Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001483515.1_202015-12- 30] 53 sequences; 9,059,225 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq27 145 9e-30 >seq27 Length=1279890 Score = 145 bits (160), Expect = 9e-30 Identities = 1052/1652 (64%), Gaps = 62/1652 (4%) Strand=Plus/Plus Query 75310 TCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTT 75369 ||| |||||||| || ||||| ||| | || || || |||| || ||||| ||| || Sbjct 445854 TCATGCAACACCCACACTCTTTAATTCAGGCACGCCGCGACCTCAAATGTCATCTTGTTT 445913 Query 75370 CCTTATCGCCAACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGC 75429 | || | || || ||||| |||||||||| || || || || | || | Sbjct 445914 TTTACTCAGGATTCCAGAAGATTCAATAAACGGTATCTTTGACACACTAACTAAATG--C 445971 Query 75430 GCAAATCTCA--AAGTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAAT 75487 ||||| | | ||| || || || ||||| || | | || | |||| | | Sbjct 445972 GCAAACATTAGTAAGACTGCAGGTGGCCTTGGGGTGGCAGTAAGTAATATTAGAGGAACT 446031 Query 75488 AAATCTCGTATTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTA 75547 || |||||| || |||||||| ||| |||| | ||||| ||||| ||||| Sbjct 446032 GGTTCATATATTCGAGGAACAAATGGGAGATCTAATGGATTAATTCCGATGCTGCGCGTT 446091 Query 75548 TTTAACGCCACAGCGCGCTATGTAAATCAAGCGGGGCGT---CGCAAGGGGTCCATCGCG 75604 | ||| | ||| || | ||| | |||||| || | || || || |||| || Sbjct 446092 TATAATGACACTGCTAGGTATATTGATCAAGGTGGAGGGAAGCGTAAAGGTGCCATTGCA 446151 Query 75605 GTCTACTTGGAACCATGGCATGCCGATATCATGGAGTTCCTTG-AGTTACGACTCAACCA 75663 | || |||||||||||||| | ||| | | ||||| ||| | ||| || || || Sbjct 446152 ATTTATTTGGAACCATGGCACGTTGATGTTGTAGAGTTTATTGAAATTAGGA-AGAATCA 446210 Query 75664 AGGTGACGAAGAGGCTCGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTT 75723 || | |||||| | ||| | ||||||||| | |||| ||| |||| || || || Sbjct 446211 TGGAAAGGAAGAGATGAGATGTCGCGATCTCTTTCCTGCCCTTTGGGTTCCTGATCTGTT 446270 Query 75724 CATGAAGCGGGTTGAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGA-CAAGGCACCAG 75782 |||| | | |||||| ||| | | ||| |||| | || ||||| || ||| | Sbjct 446271 CATGGAAAGAGTTGAGAAGGATCAAGATTGGACTCTAATGTGCCCAGATGAATGCA-GGG 446329 Query 75783 GTCTCTCCGACGCGGTGGGTGAGGAGTTT--GAAGCCCTCTACACAAAGTATGA-AGAGG 75839 | | || | ||| || || ||| |||| || || | ||||||| | | Sbjct 446330 GATTGCAAGATGTTTGGGGCGATGATTTTAAGAAG--CTATATGAAGAGTATGAGAAACA 446387 Query 75840 AGG--GTAGAGCCAATGCGACTGTACCAGCCGCCGATGTTTGGAAGGCTATTCTCA-AAT 75896 ||| || || || ||| || | || ||| || || | || ||| | | Sbjct 446388 AGGCCGTGGAAGGAAAACGA-TGAA--AG-CGCAGAAACTTTGGTTCTTAATCTTACAGG 446443 Query 75897 CACAGACGGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTA 75956 | || | ||||| || ||||||| ||| ||| || |||||| || | || |||| Sbjct 446444 CTCAAATTGAGACGGGGACACCATTTATTTGTTATAAAGATGCTGCAAATAGCAAAAGTA 446503 Query 75957 ACCAAAAGAATTTGGGAACAATCAAGAGCTCAA--ATCTT-TGCACGGAAATTTTAGAGT 76013 |||| || ||||||||||| || |||| | ||| ||||| ||||| |||| | Sbjct 446504 ACCAGAAAAATTTGGGAACTAT---TGTTTCAAGTAACTTATGCACAGAAATCATAGAAT 446560 Query 76014 ACACAGATAAGGATGAGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATG 76073 |||| ||||| || || ||||| ||| |||| || || | ||||||||||| | Sbjct 446561 ACACTAGCAAGGACGAAGTTGCCGTTTGTAATCTGGCGTCTATTGGCCTTCCAAAGTTCG 446620 Query 76074 TCAATGAAGAGACTCGCACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTA 76133 | || || | | || ||||||| ||| || | | ||| | || ||| | ||| Sbjct 446621 TTGATAAAAATAACAAGACGTTTGATTTTGATAAGTTAAAAGAAGTTACGAAGGTGATTA 446680 Query 76134 CCAAAAATCTAAACCGAGTCATTGAC---AGAAATTTTTATCCCGTTGAGACTGCGCGAA 76190 | | ||| | || | | |||||| || ||| | || | | ||| || || Sbjct 446681 CGAGGAATTTGAATAAATTGATTGACGTTGGATATTAT--TCTCTTAAAGAATG-TAAAA 446737 Query 76191 AGTCTAATATGCGACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGA-TGTATTT 76249 | || ||| | |||| | || | || | || ||||||| ||||| || ||| || Sbjct 446738 ACTCGAATTTAAGACATCGTCCATTGGGGATTGGCATTCAAGGGCTCGCAGACTGT-TTC 446796 Query 76250 ATTTTGTGCCGCTACG-CATTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTT 76308 || || || || | ||| || || || | ||| ||| || | ||| | ||||| Sbjct 446797 ATGATGCTTCG-TATGCCATACGAGTCTGAGGGAGCTAAGAAGTTAAATAAACAAATCTT 446855 Query 76309 TGAAACCATGTATCACGCATCCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTC 76368 |||| || ||| | ||| | || || || || ||||| | || ||| | ||| | Sbjct 446856 TGAAGTTATCTATTATGCAGCTCTCGATGCTAGCTGTGAGCTTGCAGAAAAATATGGTCC 446915 Query 76369 CTATGAGACATTTGAGGGTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGA 76428 || || |||| | ||||| || ||| | || | | || ||||||||||||| Sbjct 446916 ATACGAAACATATTCCGGTTCGCCTGCGAGTAAGGGTATTTTACAATTTGATATGTGGGG 446975 Query 76429 AGGTGAAACCAAGCTC--AAC--TACGACTGGGATGTTCTCAAGGAACGCATCAAGGAGA 76484 | || | |||| ||| || | || |||||| || || || | || | Sbjct 446976 A-GTTACACCAGACTCTGGACTTTGTGATTGGGATTCGCTTAAAGATAGGATTTCCAAAT 447034 Query 76485 AGGGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCT 76544 | ||| ||||||| ||| ||||| | |||||||||||||| ||||| ||||||| | Sbjct 447035 ATGGTATTCGTAATTCTCTATTGATATCTCCAATGCCAACAGCATCCACTTCACAAATTT 447094 Query 76545 TGGGTAATAATGAATGCTTTGAACCATACACAACAAACATCTACCTGAGAAGAACCCTCG 76604 | ||||| ||||| | ||||| |||| ||| | ||||| || | | || || Sbjct 447095 TAGGTAACAATGAGAGTTTTGAGCCATTCACCTCGAACATTTATCATCGTAGGGTACTAT 447154 Query 76605 CAGGTGAGTTTGTCATTGTCAACAAGCACCTCGTCAATGACCT-CAAGAAGATTGGTCTC 76663 | |||||||| | | || || |||| | | ||||| | | || || |||| | Sbjct 447155 CTGGTGAGTTCTTTGTAGTAAATCCGCACTTGCTAAATGATTTACTAG-AGCTTGGGTTA 447213 Query 76664 TGG--TCCAAGG-ATATGAAGGATCTCATGGTGAAAGCGGGTGGTTCCATTCAAAATAT- 76719 ||| | ||| || || || | || | || || || ||||||||||| Sbjct 447214 TGGGATGATAGGCTTAAACAGAATATTATTGCAAATAATGGCAGT---ATTCAAAATATA 447270 Query 76720 CTCAGATATCCCAGATGATATCAAGAATCTCTACCGCACAGTGTGGGAAATCAAGATGAA 76779 || | | || || || ||||| | || || || || |||||||||||| || Sbjct 447271 CTTACA-ATTCCGGAGGATATACGTGAGCTTTATAAGACTGTATGGGAAATCAAG-CAAA 447328 Query 76780 AGA-TGTCATTGACATGGCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGA 76838 ||| || ||||| ||||| |||||| | |||| | || |||| ||| | ||| Sbjct 447329 AGACAGTAATTGATATGGCTGCAGATAGGGGTCCATATGTTTGTCAATCGCAATCTTTGA 447388 Query 76839 --ATCTATTCATGGAAAGT-CCAACGATGTCCAAGCTCTCTTCTATGCATATGTACGCGT 76895 ||| || ||||||| | | ||| || | ||| | || ||||||||| | || | | Sbjct 447389 ACATCCAT--ATGGAAAATGCTAACTTTG-CAAAGTTATCATCTATGCATTTTTATGGTT 447445 Query 76896 GGAAACAGGGGCTCAAAACCGGAATGTACTAT 76927 ||||| | || || ||||| || || || ||| Sbjct 447446 GGAAAAAAGGTCTAAAAACAGGCATTTATTAT 447477 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596569204772640