Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001483515.1_202015-12- 30] 53 sequences; 9,059,225 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq39 158 4e-33 seq27 113 1e-19 seq28 87.8 5e-12 >seq39 Length=873289 Score = 158 bits (174), Expect = 4e-33 Identities = 354/521 (68%), Gaps = 17/521 (3%) Strand=Plus/Plus Query 288848 TCCTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTG 288907 |||||||||| || || | ||| |||||||| || ||||||| ||| | | |||||| Sbjct 743674 TCCTATCAAATCTTCCTGGACGTGTTAATGCAGGATCTAATACATCAGAACGATTTGTTC 743733 Query 288908 CTGCCAATACAACAA-TAGATTCGGTTTGCTTAAATCCATCCATACTTGTTAAAATTTGA 288966 |||| || || | | | ||| ||| ||||||||||||| | | ||| ||| Sbjct 743734 CTGCTAAAACTATTACTCCATTAT-TTTCAGTAAATCCATCCATTTCTACAAGAATCTGA 743792 Query 288967 TTAAGTGTTTGTTCCCTTTCATCATT---TGAACCTCTTGAATCACCCGAATC-GCTCCt 289022 ||||| || ||| || |||||||| |||| | | ||||| | || | Sbjct 743793 TTAAGAGTGCTTTCTCTCTCATCATTAGATGAAGCAGCAAATCCACCCCCTTTTGCACGC 743852 Query 289023 ttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGC 289082 ||| || ||||| ||||||||||| ||||| |||| | || ||||| || ||| || Sbjct 743853 TTTCTT-CCAACTGCATCAATTTCATCAATAAAAACAATACTTGGAGATAATTTTCTTGC 743911 Query 289083 AATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTC 289142 || ||||||||||||||| | ||| || | |||||| | || || | ||| || Sbjct 743912 CTGTGAAAATAATTCTCTTACTCTACTTGCACCCATTCCAACAAAAATCTCAATAAAATC 743971 Query 289143 AGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAG 289202 | | |||| | || |||| |||||| ||||| || || || || | || | | Sbjct 743972 ACTTCCAGATATATAAAAAAATGGTACATTAGCTTCACCAGCAACAGCTTTTGCTAATAA 744031 Query 289203 TGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGC 289262 ||| ||||| || || |||||||| | |||| | | || ||||||| |||||| ||| Sbjct 744032 TGTTTTACCGGTACCTGGTGGTCCTACCAATAAAGCACCTTTTGGTATTTTTGCACCA-- 744089 Query 289263 AGA-CTT---ATATTTCTCAGGGCTC-TTTAAAAATTCTACAATTTCCTCAAGTTCATAT 289317 ||| ||| || ||| | || || ||||| |||||||| | ||| | | ||| | | Sbjct 744090 AGATCTTGAAATCTTTTT---GGATCTTTTAAGAATTCTACCAATTCATATATTTCTTGT 744146 Query 289318 TTTGCCTCATCACATCCTGCTACATCAGCAAAAGTAATATT 289358 || || || | ||| || | |||| ||| ||||||| Sbjct 744147 TTGGCTTCTTTCATTCCAGCAATATCACTAAATTTAATATT 744187 >seq27 Length=1279890 Score = 113 bits (124), Expect = 1e-19 Identities = 774/1231 (63%), Gaps = 52/1231 (4%) Strand=Plus/Minus Query 155313 TCCAGAGCCGCAAAATAAATTGTCTCAAAGATATATTTATTGACTGTTTTAGCCTCCTCA 155372 || ||||| ||| |||| || |||||||| | |||||| | | ||||| ||||| Sbjct 446882 TCGAGAGCTGCATAATAGATAACTTCAAAGATTTGTTTATTTAACTTCTTAGCTCCCTCA 446823 Query 155373 GATGTAAATGCGATATC---CATCTTGAAAAATGTGTCGGCTAAACCCTGAACTCCAATA 155429 || ||| ||| |||| ||||| | ||| || | || |||| ||||| Sbjct 446822 GACTCGTATGGCATACGAAGCATCATGAAACA---GTCTGCGAGCCCTTGAATGCCAATC 446766 Query 155430 CCGACTGGGCGATGCCTGTAATTGCTCCTGCTTGTCTTCTTGTTTGGGTAAAAATTC--A 155487 || | ||| ||||| || |||| | | || ||||| | | | | || || | Sbjct 446765 CCCAATGGACGATGTCTTAAATT-CGAGTTTTTACATTCTT-TAAGAGAATAATATCCAA 446708 Query 155488 CATCAATAATGTTATTTAAATTT---GTAACCAATACCTTGGTTACGTCTGCTAATTTCA 155544 | ||||| | ||||| ||||| |||| || |||| || || ||| ||| || Sbjct 446707 CGTCAATCAATTTATTCAAATTCCTCGTAATCA---CCTTCGTAACTTCTTTTAACTTAT 446651 Query 155545 CATAGTCAAATGTTTT---ATCCTCATTTACAAACATACCAAGACCAATAGACGCCAGAT 155601 || | ||||| || || || | || || ||| | ||| |||||||||||||||| Sbjct 446650 CAAAATCAAACGTCTTGTTATTTTTATCAACGAACTTTGGAAGGCCAATAGACGCCAGAT 446591 Query 155602 TACATACCGCAGTCTCCTTGTCGTCGCT---GTATTCTACAATCTCACAGCACAGGTTAG 155658 |||| || ||| || ||| | ||| |||||||| || || ||| | |||| Sbjct 446590 TACAAACGGCAACTTC---GTCCTTGCTAGTGTATTCTATGATTTCTGTGCATAAGTTA- 446535 Query 155659 AACTCTTGA-----TGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCATCCTT 155713 ||||| | || || ||||| ||||||||| ||| || || |||||| || Sbjct 446534 ----CTTGAAACAATAGTTCCCAAATTTTTCTGGTTACTTTTGCTATTTGCAGCATCTTT 446479 Query 155714 GTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAGCCAGAGGTC 155773 || ||| |||| || || ||||| || || || | | || | ||| || | Sbjct 446478 ATAACAAATAAATGGTGTCCCCGTCTCAATTTGAGCCTGTAAGATTAAGAACCAAAGTTT 446419 Query 155774 ACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGACTCATATT--TCATATACAGCGTT 155831 | || || || || | | ||||| |||||| | ||||||| || | Sbjct 446418 CTGCGCTTTCATCGTTTTCCTTCCACGGCCTTGTTTCTCATACTCTTCATATA--GCTTC 446361 Query 155832 CGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCAAAACAGCGAC 155891 |||| || || || ||| || ||| ||| | ||| ||||| | || | | Sbjct 446360 TTAAAATCATCGCCCCAAACATCTTGCAATCCCCTGCATTCATCTGGGCACATTAGAGTC 446301 Query 155892 CAAATTTTATTACCGATTACACGCT--CCATAAATACATCACTCGCCCAAATAGCATAGA 155949 ||| || || || | || || |||| || | |||| |||||| ||| | Sbjct 446300 CAATCTTGAT--CCTTCTCAACTCTTTCCATGAACAGATCAGGAACCCAAAGGGCAGGAA 446243 Query 155950 AAAGGTCCCTTGCCTTTGA-CTCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGAATTCC 156008 | || || | | | | | ||| || | || |||||||||| | || | || || Sbjct 446242 AGAGATCGCGA-CATCTCATCTCTTCCTTTCCATGATTCTTCCTAATTTCAATAAACTCT 446184 Query 156009 TCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCCTCTTGCC---A 156065 ||| |||| || ||| |||| ||| || |||| ||| || | ||| || | Sbjct 446183 ACAACATCAACGTGCCATGGTTCCAAATAAATTGCAATGGCACCTTTACGCTTCCCTCCA 446124 Query 156066 CCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCATTG 156125 || ||||| | ||||| |||||| | ||| | || | ||||| ||||| | ||||| Sbjct 446123 CCTTGATCAATATACCTAGCAGTGTCATTATAAACGCGCAGCATCGGAATTAATCCATTA 446064 Query 156126 GAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATATGTAGT 156185 || | ||||| ||||| ||||||| ||||||| | | || |||| | | Sbjct 446063 GATCTCCCATTTGTTCCTCGAATATATGAACCAGTTCCTCTAATATTACTTACTGCCACC 446004 Query 156186 CCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCT 156245 |||| ||||||| ||| ||| | ||||||| ||| || | || ||||| Sbjct 446003 CCAAGGCCACCTGCAGTCTTACTAATGTTTGCGCATTTAGTTAGTGTGTCAAAGATACCG 445944 Query 156246 TCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTT 156305 | || ||||| ||| || |||| | | || || | ||||||||| || || Sbjct 445943 TTTATTGAATCTTCTGGAATCCTGAGTAAAAAACAAGATGACATTTGAGGTCGCGGCGTG 445884 Query 156306 CCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGACATATAATCGTAT 156365 || | || || ||||| |||||||||||| ||||||| || | || | | || ||| Sbjct 445883 CCTGAATTAAAGAGTGTGGGTGTTGCATGAGTAAAATATTTTTGCGATAACAACTCATAT 445824 Query 156366 GTCTC--CTTAATCTTCTCAAGATTAGACCCGTGAATACAGATAGAGACCCTCATCCACA 156423 || || | | || |||| || | | ||||||| ||| |||| |||| | Sbjct 445823 GTTTCAAGTGCAGCT--TCAATATCACCACAATGAATACCACAAGAAACCCGCATCAGAA 445766 Query 156424 TATGCTGAGGACGCTCTACAATCACTCCATCAATTCGCAGAAGGTATGCGCGTTCCAGAG 156483 ||| || || | || |||| |||||| ||||| || | | ||| |||| Sbjct 445765 GATGTTGTGGTCTTTCCACAACTTTGTTGTCAATTTTAAGAAGATAGGATCTTTCTAGAG 445706 Query 156484 TTTTAAACCCGAAATAATCAAACAGAAAATC 156514 |||| || | ||||||||| | |||||| Sbjct 445705 TTTTGAAGGCAAAATAATCATATTCAAAATC 445675 Score = 84.2 bits (92), Expect = 6e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 448899 GAAATCAAGAAGGCATATAAACGACTCGCAATTAAACATCATCCTGATAAAAATCCAGAT 448958 ||||| | |||| |||||| | | | ||| | ||| |||||||||||||| || ||| Sbjct 614893 GAAATAAGGAAGTCATATAGAAAATTAGCATTAAAATGGCATCCTGATAAAAACCCTGAT 614834 Query 448959 AATAAAGCAGAGGCAGAGGAGAAATTCAAAGAGATTTCTCAAGCTTATGAAATT 449012 |||| || ||| || ||||||| |||||| ||||| | ||||||| ||| || Sbjct 614833 AATAGAGAAGAAGCTGAGGAGATGTTCAAAAAGATTGCAGAAGCTTACGAAGTT 614780 >seq28 Length=318753 Score = 87.8 bits (96), Expect = 5e-12 Identities = 235/355 (66%), Gaps = 6/355 (2%) Strand=Plus/Minus Query 302494 ATTCCGTCATCGCCGTA--GGAATACTGAATGATTTTGTTCTTGTTATTTCTTACGGTCA 302551 ||||| || || || || ||||| ||||| || | | || |||| || || || Sbjct 74032 ATTCCATCTTCTCCATAAAGGAAT--TGAATAATATCGCCATTACTATTCCTAACAGTTC 73975 Query 302552 TATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAG 302611 ||||||| | |||| |||||||| ||| |||| | | || ||||| || | Sbjct 73974 TATCATATTGCACCATACAATCTTCCATTGCCTTTATTAGCCTTCTTTGTATATACCCTG 73915 Query 302612 TTGTAGATGTTTTTACA-GCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAG 302670 || || ||||| ||| || |||||||| | || | | || ||||||||||| || Sbjct 73914 TTTCTGAAGTTTT-ACACGCAGTATCAATGATTCCTTCTCTGCCTCCCATAGCATGAAAA 73856 Query 302671 AATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCG 302730 || | || | ||| || || || | | ||| || ||| |||||||| || Sbjct 73855 AAAACTTCCTGGGGTGTAAGACCTGAAAGATATGAGTTCGAAACAAAACCACGACTTTCA 73796 Query 302731 GGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATA 302790 ||| || || | || ||||||||||| | | || | | | | || |||| || Sbjct 73795 GGCCCATAATCATATTTCAAAAAGTGTGGCAAGCTTCTATCCCTAAATCCAAATGGAATG 73736 Query 302791 CGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTA 302845 || || || ||||| || |||||||| | ||| | || ||||| |||||||||| Sbjct 73735 CGTTTACCTTCAACATTTTGCTGTCCAACGCATGCCATAATCTGTGAAATATTTA 73681 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471816600543861