Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001483515.1_202015-12- 30] 53 sequences; 9,059,225 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq27 176 1e-38 seq36 134 3e-26 >seq27 Length=1279890 Score = 176 bits (194), Expect = 1e-38 Identities = 546/825 (66%), Gaps = 25/825 (3%) Strand=Plus/Minus Query 131465 ATGTATAAGAAATCTGTTGCGGCCTTCTGGACTGTTGAAGAGATCGATATGACCAAAGAT 131524 |||||||| ||| ||| || | || ||| | ||||||||| ||| | | ||||| Sbjct 169400 ATGTATAAAAAAGCTGAAGCATCATTTTGGGTTACTGAAGAGATTGATCTAAGTCAAGAT 169341 Query 131525 ATTGATGATTGGGAAAAA-TTAACCTTGAA--TGAAAAAGATTTTGTTTCCAA-AGTTCT 131580 | | |||||||||| |||| || ||||| | ||||| | | || | ||| Sbjct 169340 ACTAGAGATTGGGAAAGTCTTAAA---GACCCTGAAAGACATTTTAT--CAAATACGTCT 169286 Query 131581 T-GCATTCTTCGCCGGAAGTGATGGCATTGTTATTGAAAATCTTGTTATTAATTTCATTC 131639 | |||||||| || | |||||||||||||||||| ||||| | | | |||||| || Sbjct 169285 TAGCATTCTTTGCTGCAAGTGATGGCATTGTTATGGAAAACTTAGCAGTAAATTTCCTTA 169226 Query 131640 AAGAAATTGATATTCCTGAAGTAACATCGTTCTACACATTTCAAGCCGCTGTTGAATCTA 131699 |||||| | || || |||| | | || || | |||||| || ||||| | Sbjct 169225 GAGAAATACAAATACCAGAAGCCAGAATGTATTATGCTTTTCAAATGTCTATTGAACAAA 169166 Query 131700 TTCATAGCGAGATGTATTCATTATTGATTGAGAGTCTTGTTAAAAATGAAGATGATAAAA 131759 | ||||| || | ||||||||| | ||||| || | ||| ||| | | || Sbjct 169165 TACATAGTGAAACTTATTCATTACTTATTGATAGATATATTAC---TGATATTAAAGAAC 169109 Query 131760 AT-AAAT--TATTTGATGCTGTAAATAAATTTCCTGCAATTAAAAAGAAAGCAGAATGGG 131816 | |||| | ||||| || | | | || || ||||||||||||||||||||| Sbjct 169108 GTCAAATGCTCTTTGAAGCAATTTCTCATATTGAAGCTGTTAAAAAGAAAGCAGAATGGG 169049 Query 131817 CTATTAAATGGATTCAAGATGATTCCGCTAATTTTTCTACAAGACTTGTAGCTTTTGCTT 131876 | | ||||||||| | ||| || | |||| || |||| || | | || | Sbjct 169048 CAACTAAATGGATGAATTCTGAA--CGATC-TTTTGCTGAAAGAATTATTGGATTCTGTG 168992 Query 131877 GTGTTGAAGGTATATTCTTTTCAGGT-GCTTTCTGTGCTATCTTTTGGCTTAAGAAGCGT 131935 ||||||||| || | ||||| ||| ||||| ||||| || ||||||||||| || ||| Sbjct 168991 CTGTTGAAGGAATTCTATTTTCTGGTAGCTTT-TGTGCAATTTTTTGGCTTAAAAAACGT 168933 Query 131936 GGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAGAGATGAAGCATTGCAT 131995 ||| | |||||||||||| |||| || ||| || | || | ||||||| | ||| Sbjct 168932 GGACTTATGCCTGGACTCACATTTTCTAATGAACTTATTAGTCGTGATGAAGGTCTCCAT 168873 Query 131996 ACTGAATTTGCTATATTAATCTATAGAAAATTTGCTGATAAACTTGATGAAAATAATATT 132055 |||| |||||| ||||| |||| | || |||| | | || | Sbjct 168872 GCTGACTTTGCTTGTTTAATATATAAAGCCCTTAAATTTAAATTACCAGCTCCTAGAGTA 168813 Query 132056 AAACAACTTATAAGCGAAGCAGTTGATATCGAGAAGGAGTTTATTACAGAAGCTTTGCCT 132115 ||||| | ||| ||||| ||||| | || | | ||| || || || | ||| Sbjct 168812 CAACAAATCATATCAGAAGCTGTTGAAGTTGAAAGAAACTTTCTTTGTGACTCTCTTCCT 168753 Query 132116 TGCAATTTGATTGGGATGAA-TGCTGACTCTATGAAGGAGTACATTGAATTCGTTGCTGA 132174 || | ||||| ||||| | |||| |||| | || |||||||| |||||||| Sbjct 168752 GTTGATCTTATTGGTATGAACTCAAGACT-TATGGCCCAATATATTGAATTTGTTGCTGA 168694 Query 132175 TCGTTTAATTAACCAACTTGGATATTCC-AAGATTTATAACACCCAAAACCCCTATACAT 132233 | | ||| || |||||||||||| || || || ||| || || | | | Sbjct 168693 TAGATTACTT-TTTGCCTTGGATATTCCAAAAATCTACAACGTTTCTAATCCTTTTGATT 168635 Query 132234 GGATGGAGTCAATTTCGCTTGAAGGTAAAACGAACTTCTTCGAAA 132278 ||||||| ||||| ||| |||||||||| ||||||||||||| Sbjct 168634 GGATGGACCTTATTTCACTTCAAGGTAAAACTAACTTCTTCGAAA 168590 Score = 104 bits (114), Expect = 6e-17 Identities = 322/491 (66%), Gaps = 23/491 (5%) Strand=Plus/Plus Query 112955 TGATTGGAAAAATCTTAAAGATAGTGTTATGAAACATGGAACTACAAACTCTCTACTGTT 113014 ||||||| | ||||||||||| || ||| |||| | | || |||||| || | Sbjct 447000 TGATTGGGATTCGCTTAAAGATAGGATTTCCAAATATGGTATTCGTAATTCTCTATTGAT 447059 Query 113015 GGCACCAATGCCTACAGCTTCGACTGCACAGATTCTCGGTAATAATGAATGTTTCGAGCC 113074 | |||||||| ||||| || ||| |||| ||| | ||||| ||||| |||| ||||| Sbjct 447060 ATCTCCAATGCCAACAGCATCCACTTCACAAATTTTAGGTAACAATGAGAGTTTTGAGCC 447119 Query 113075 AATTACAAGTAATATTTATGTCCGACGTGTTCTAGCAGGTGAGTTTGTACTTTGTAATAA 113134 | | || || |||||| || | || ||| | |||||||| ||||||| ||| Sbjct 447120 ATTCACCTCGAACATTTATCATCGTAGGGTACTATCTGGTGAGTT----CTTTGTAGTAA 447175 Query 113135 AT----ATCTGCAAGAAGAACTTCTCGGAATCGGTAAATGGAACAATGAAGTGAAAAACT 113190 || | ||| | | || | || | | || |||| | || | ||| | Sbjct 447176 ATCCGCACTTGCTAAATGATTTACTAGAGCTTGGGTTATGGGATGATAGGCTTAAACAGA 447235 Query 113191 CCATTATTGCTAATCAAGGTTCGGTTCAACAT---CTAAAATTGCCTGA----TTGCGTG 113243 |||||||| ||| | || ||||| || || | | | || || | |||| Sbjct 447236 ATATTATTGCAAATAATGGCAGTATTCAAAATATACTTACAATTCCGGAGGATATACGTG 447295 Query 113244 AAAGATGTATTTAAGACTATTTGGGAAATTAAGCAACGTGTCGTAATTGATATGGCTGCA 113303 || | || ||||||| | |||||||| |||||| |||||||||||||||||| Sbjct 447296 --AGCTTTA--TAAGACTGTATGGGAAATCAAGCAAAAGACAGTAATTGATATGGCTGCA 447351 Query 113304 GATCGTGGCAAGTTTATCGATCAATCTCAGTCGATGAACTTATTTATGCCGGACA-CCTC 113362 ||| | || | | | |||||| || || ||||| | |||| | | | || Sbjct 447352 GATAGGGGTCCATATGTTTGTCAATCGCAATCTTTGAACATCCATATG--GAAAATGCTA 447409 Query 113363 AC-CAGATAAGGTGACATCTGCTCTATTTTACGGCTGGAAAAAAGGTTTAAAAACAGGTA 113421 || | ||| | ||||| | ||||| || |||||||||||| |||||||||| | Sbjct 447410 ACTTTGCAAAGTTATCATCTATGCATTTTTATGGTTGGAAAAAAGGTCTAAAAACAGGCA 447469 Query 113422 TGTATTATTTG 113432 | ||||||||| Sbjct 447470 TTTATTATTTG 447480 Score = 100 bits (110), Expect = 7e-16 Identities = 329/505 (65%), Gaps = 15/505 (3%) Strand=Plus/Minus Query 304986 TTAAAGGTAAAGAGGGTCGTATTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTG 305045 ||||||||||||| || ||| | |||| ||| | | || ||| | ||||||||||||| Sbjct 769461 TTAAAGGTAAAGAAGGACGTTTCAGAGGAAATTTGAGTGGTAAAAGAGTTGATTTTAGTG 769402 Query 305046 CAAGAAGTGTAATCACACCTGATTCTCAAATTAGTCTTCATGAATTAGGAGTTCCAATTG 305105 ||| | ||| || | ||||| || | ||| || ||||| | | ||| || || Sbjct 769401 GAAGGACTGTTATTTCTCCTGACCCTAATATTGAAGTTGATGAAGTTGTAGTACCTATGA 769342 Query 305106 AAATTGCTTTAAAACTAACATTTCCAGAGAAAGTTAACGAGAAAAATATTAAACATTTGA 305165 ||||| ||| | || | ||| || | |||||| | | |||||| | ||| | Sbjct 769341 TCATTGCAAAGAAATTGACTTATCCCGAAAGAGTTAATGCTATTAATATTGACTCTTTAA 769282 Query 305166 GACGTTGTGTTCTTAATGGAAATAGCAAGTATCCAGGTGCTCGTGCTGTTATAAAACACA 305225 || |||||| |||||| || | | ||||| || | |||| || || | Sbjct 769281 GAGAAGCTGTTCTAAATGGACATGATATTTGGCCAGGAGCATGCTATGTT-TATAAGA-- 769225 Query 305226 AGCAAAAGAAGACAATAT---CTTTGAACCATATCGATTTAAAACAATTCAGTAAAATG- 305281 | || |||| ||| | ||| || ||| || || | || | | | Sbjct 769224 -GTAATGGAAGCAAATCTAGTCTTAGA----TATGCTAATAGAAGAGTTGTATCAGAGCG 769170 Query 305282 -CTTGAAATTAATGATATTGTTATCAGACATTTGAATGACAATGATTGGGTTCTGTTCAA 305340 ||||| ||| |||||||| |||||| |||| ||| || | ||||| Sbjct 769169 TCTTGAGATTGGAGATATTGTAGAAAGACATATGAAAACTGGAGATATCGTCTTATTCAA 769110 Query 305341 TAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTATC-TG 305399 ||| |||||| | |||| | | ||| ||| |||| ||||| ||| | | || Sbjct 769109 TAGACAACCAAGTTTACATAGACTTAGTATTATGTCTCACAAAGTTGTAGTTATGCCATG 769050 Query 305400 GATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTGATGGAG 305459 || || ||| |||| |||| | |||||||| | ||||||||||| ||||| ||||||| Sbjct 769049 GAGA-ACTTTTAGATTCAATGAATGTGCTTGTGCTCCTTATAATGCAGATTTCGATGGAG 768991 Query 305460 ATGAAATGAATATGCATGTACCTCA 305484 ||||||||||| | ||| | ||||| Sbjct 768990 ATGAAATGAATCTTCATCTTCCTCA 768966 >seq36 Length=268453 Score = 134 bits (148), Expect = 3e-26 Identities = 812/1279 (63%), Gaps = 81/1279 (6%) Strand=Plus/Minus Query 279065 GGTATTCCAAAACTTGATGATGCAAACTGGGCTGGAGGTCGTAAATCTCAAGAATGTGCT 279124 || || ||||||||||| ||||||||| ||||| || | | || || ||||| || Sbjct 55808 GGAATCCCAAAACTTGAAGATGCAAACGAAGCTGGTGGACCCCATTCCAAAAAATGTACT 55749 Query 279125 TTATTTCTTACTGAGGGAGATTCTGCTGCTACATTTGCGATTGCTGGTTTATCTGTTATT 279184 | | |||||||| || ||||||||| || | | |||| || |||||| || || Sbjct 55748 CTTATACTTACTGAAGGTGATTCTGCTAAAACTTCTTGTCTTGCAGGATTATCTATTGTT 55689 Query 279185 GGTCGTGATAAATATGGCGTATTTCCTTTAAGAGGTAAAGTAATTAATGCTCGTGATAAA 279244 ||| | || | | ||| |||||||| || | |||||| | | |||| | | || Sbjct 55688 GGTAGAGACTATTTTGGAGTATTTCCACTACGTGGTAAACTTTTAAATGTTAGAGA---- 55633 Query 279245 ATCACAACACAGGCTGGTTTAAAGCAAGTAAATGCTAATGCTGAATTGATTAATTTAAAA 279304 || | |||||| ||| || || ||||| |||| | ||| | Sbjct 55632 ----------AGCTTCATTTAAA-CAACAAATTGGTAATGTTGAAATACAAAATATTCTT 55584 Query 279305 CAAATATTGGGATTAGAGCAAGGTAAAAAATACAAAGATACATCA---AGTTTACGATAT 279361 ||||||||||||||| || ||||||| | || | || | |||| ||||| Sbjct 55583 AAAATATTGGGATTAGGTATTGGACAAAAATATGATAATGGACCAGTCAATTTAAGATAT 55524 Query 279362 GGTAAAATTATTATTTTGACAGACCAAGATTTAGATGGAAGTCACATTAAAGGATTAATA 279421 ||| | || | |||| || |||||| ||||| ||||| ||||||||| | || Sbjct 55523 GGTTCTTTAATGCTAATGACTGATCAAGATCATGATGGTAGTCATATTAAAGGACTCATT 55464 Query 279422 CTTAATTGGGTTGATACTTTCTGGCCAGAATTG-TTGAATCAAAAT--TTTGTAAGTGTG 279478 |||||| | || || |||||| || || | | | | || ||| Sbjct 55463 ATTAATTTAATACATTATTATTGGCCAAGTTTAATTCATTTTAGAGGATTCTTAAAACAA 55404 Query 279479 TTTCAAACACCAATTATTAAGGCAACTAAAGGTAAAAAAGAAGAAGTATTTTATTCATTG 279538 ||| ||| || ||| |||| || | ||||| || ||| ||| | | | || Sbjct 55403 TTTGTAACTCCTATTGTTAAAGCTAAAAAAGGATCTAATGAAATTTCATTCTTTACTTTA 55344 Query 279539 CAGAAGTTTGAACAATGGA--AAGATTCAGT--TGAGAATTCAGCCTCATTCCATAC-CA 279593 | | | ||||||||||| |||| | | | | | | || | | | | | || Sbjct 55343 TATGAATATGAACAATGGAGAAAGAATAATTCATCAAACTTAAA--TGGATGGAGATTCA 55286 Query 279594 AGTATTTTAAAGGTTTAGCAACATCCAATACTAAGGAAGCAAAAGAATATTTTAAAAA-A 279652 |||||| ||||||||||| ||||| | | ||| ||||||||||||| ||| | Sbjct 55285 AGTATTATAAAGGTTTAGGTACATCTACAGATCTTGAATTTAAAGAATATTTTACAAAGA 55226 Query 279653 TTAACACTTCA-------GAATTTTAATGCTAATGAGAAATCAAC----TAATGCTCTTG 279701 || | | | || |||||| | || ||| ||||| | | || ||| Sbjct 55225 TTGAAAAT-CATAGTATTGAATTTGATTGG--ATGGATGATCAAGATGATGAAGCCATTG 55169 Query 279702 ATAAAGCTTTCAACAAATCTCGTGCTGATGATCGTAAAAACTGG-TTGAGAAATTATGAT 279760 ||| || |||| ||| | |||| ||| | || |||||| |||| | |||| | Sbjct 55168 ATATGGCATTCAGTAAAAAAAGAACTGAAGATAGAAAGAACTGGATTGA-ATCTTATAAA 55110 Query 279761 -AAGGA-----TGAT-ATAATTG-ATGAAGAA-CAA---ACTAATGTGACTTGTGAAGAA 279808 ||||| || | || ||| || || || ||| | ||| | | | | || Sbjct 55109 GAAGGAACTTATGTTGATTATTCTATTAATAATCAATGCAGAAATTTAAGATATTTTGAT 55050 Query 279809 TTTATTGATAAAGAACTGATCCATTTTTCTAATTATGATGTTCATCGTTCTATTCCTCAT 279868 |||||| |||||||||| | ||| || |||||| | | | |||||||| || Sbjct 55049 TTTATTCATAAAGAACTTGTATTATTTAGTAGATATGATACTACTAGATCTATTCCAAAT 54990 Query 279869 TTAATGGATGGTTTGAAACCTTCACAGCGTAAGATTATATTCAGTTG-----TTTCAAAA 279923 ||| | |||||||| |||||| ||| | || | || || ||| ||| |||| Sbjct 54989 TTATTAGATGGTTTAAAACCTGGACAAAGAAA-AGTACTTT---TTGCAACATTTAAAAA 54934 Query 279924 GAAAATTGGTAAAGGAAATTCGTGTTGCTCAGTTAGCAGGTTATGTTTCAGAACATGCAG 279983 || || ||| | || || ||||| || ||||| ||||||||| | |||||| | Sbjct 54933 AAAGCTTAATAATG-AACTTAAAGTTGCACAATTAGCTGGTTATGTTGCTGAACATAGTG 54875 Query 279984 GTTATCATCACGGTGAAGCGTCTCTTCAAGGTGCTATTGTAGGTCTTGCCCAAGATTTTA 280043 ||||||||| || ||| | || | ||| || ||||||| | | || ||| ||||| Sbjct 54874 CTTATCATCATGGAGAATCATCATTACAAAGTACTATTGTTAATATGGCTCAAAATTTTG 54815 Query 280044 TGGCTTCAAACAACTTAAATCTGCTTTCACCAAATGGTCAATTTGGTTCTCGTATTCACA 280103 | | || || |||||||| | |||| ||||||||||||| | | | | Sbjct 54814 TTGGAAGTAATAATCTAAATCTGTTAGAACCATGTGGTCAATTTGGTAGTAGAAAAGAAG 54755 Query 280104 ATGGAAAAGATCATGGTAGTGCTCGTTACATACATACATGTCTTTCAGATAT-TACA--A 280160 |||||||||| || ||||||||| ||| ||| | || ||| || | Sbjct 54754 GTGGAAAAGATGCAAGTGCTGCTCGTTATATATTTAC-------TAAGCTATCTAAATGG 54702 Query 280161 ACAAGTTAT-TTATC---AATTCTGATAATGCTTCATTAGAGTGGCTAGAGGATGATGGT 280216 || || ||| || || | ||||| || ||| |||| | || | |||||||| Sbjct 54701 ACTAGATATATTTTCCCAGAGGCTGATGATCCTTTATTAACTTATTTATATGATGATGGA 54642 Query 280217 CTTGCTATTGAACCAACATATTATGCTCCAATTATCCCTATGATTCTTGTTAATGGTGCT 280276 | |||||||| |||||||| |||||| || || |||||| | || |||||| || Sbjct 54641 CAACAAATTGAACCTTTATATTATGTTCCAATAATTCCAATGATTTTGGTAAATGGTACT 54582 Query 280277 CAAGGAATTGGAACAGGTT 280295 | |||||||| ||||||| Sbjct 54581 GATGGAATTGGTACAGGTT 54563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186811994079933