Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001483515.1_202015-12- 30] 53 sequences; 9,059,225 total letters Query= NC_026430.1 Length=125767 Score E Sequences producing significant alignments: (Bits) Value seq42 107 2e-18 seq10 96.9 3e-15 >seq42 Length=592675 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 106248 AAGAGTTTAAAAATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAA 106307 |||| | ||| ||||| ||||||||||| || ||||| || ||||| || || ||||| Sbjct 88296 AAGAATACAAATATGCAGATTTTTGTTAAGACTTTGACAGGAAAGACTATCACTTTGGAA 88355 Query 106308 ACAGAACCCGGCGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTG 106367 ||||| ||| | ||| | || || ||| ||| || || ||||| | Sbjct 88356 GTTGAACCTTCAGATACAATTGAGAATGTTAAGGCAAAGATTCAGGATAAGGAAGGAATC 88415 Query 106368 CCCGTTGATCAACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATG 106427 || |||||||||| | | || | ||| || ||||||||||| ||| || |||| | Sbjct 88416 CCACCTGATCAACAACGTTTGATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTC 88475 Query 106428 GGCGATTACAACATACAAAAAGAATCTACACTACATTTAGTATTGAG 106474 ||||||||||| |||||||| || || |||| ||||| ||||| Sbjct 88476 TCTGATTACAACATTCAAAAAGAGTCCACTTTACACTTAGTCTTGAG 88522 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| |||||||| || || ||||| || ||||| || || ||||| ||||| Sbjct 88536 ATGCAGATTTTTGTCAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTTGAACCTTCA 88595 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| | ||| | || || ||| ||| || || || || | || ||||||| Sbjct 88596 GATACAATTGAGAATGTTAAGGCAAAGATTCAAGATAAGGAGGGAATCCCACCTGATCAA 88655 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||| | | || | ||| || ||||||||||| ||| || |||| | || |||||| Sbjct 88656 CAACGTTTGATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTCTGACTACAAC 88715 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 || |||||||| ||||| ||||||||||||||||| | |||| || Sbjct 88716 ATTCAAAAAGAGTCTACTTTACATTTAGTATTGAGGCTCAGAGGTGG 88762 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| ||||| ||||| || ||||| || ||||| || || ||||| ||||| Sbjct 88764 ATGCAGATTTTCGTTAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTTGAACCTTCA 88823 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| | ||| | || || ||| ||| || || ||||| | || ||||||| Sbjct 88824 GATACAATTGAGAATGTTAAGGCAAAGATTCAGGATAAGGAAGGAATCCCACCTGATCAA 88883 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||| | | || | ||| || ||||||||||| ||| || |||| | ||||||||| Sbjct 88884 CAACGTTTGATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTCTGATTACAAC 88943 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGGA 106487 || |||||||| || || |||| ||||| ||||| | |||| ||| Sbjct 88944 ATTCAAAAAGAGTCCACTTTACACTTAGTCTTGAGACTTAGAGGCGGA 88991 >seq10 Length=470636 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 106257 AAAATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCC 106316 || |||||||||||||| ||||| || || || |||||||| || ||||| ||||| Sbjct 335978 AAGATGCAAATTTTTGTCAAAACTTTAACAGGAAAGACCATCACATTGGAAGTTGAACCT 335919 Query 106317 GGCGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGAT 106376 |||| || ||| | || || ||| || || || || ||| | || |||| Sbjct 335918 TCCGATACTATTGAGAATGTAAAGGCAAAGATCCAGGATAAGGAGGGCATTCCTCCTGAT 335859 Query 106377 CAACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTAC 106436 ||||| | || || | ||| || || ||||| |||||| || |||| | || ||| Sbjct 335858 CAACAGCGTCTGATCTTTGCTGGAAAGCAATTGGAAGATGGTAGAACTCTATCTGACTAC 335799 Query 106437 AACATACAAAAAGAATCTACACTACATTTAGTATTGAG 106474 || || || || || || || | |||||||||||||| Sbjct 335798 AATATCCAGAAGGAGTCCACTTTGCATTTAGTATTGAG 335761 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 402329340120224