Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001483515.1_202015-12- 30] 53 sequences; 9,059,225 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq27 259 5e-64 seq24 199 4e-46 >seq27 Length=1279890 Score = 259 bits (286), Expect = 5e-64 Identities = 596/879 (68%), Gaps = 59/879 (7%) Strand=Plus/Plus Query 23219 TTTGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTTACCCTCTAATGATATATTTT 23278 |||||||||| ||||| | ||||||| || || || ||||| | | ||| ||| | Sbjct 168569 TTTGATATTCACCAACTCTCTTTTCGAAGAAGTTAGTTTTACCTTGAAGTGAAATAAGGT 168628 Query 23279 CCATAAAATCAAATGGATTAGAAGTATTATATACAGCTTTACATGAT--AATTCCTTTAA 23336 |||| ||||||| ||||||||| || || | ||| | || || | || Sbjct 168629 CCATCCAATCAAAAGGATTAGAAACGTTGTAGATT--TTTGGAATATCCAAGGCA---AA 168683 Query 23337 AAGC---CTATCTGCTACAAATTCAATATATTGACACATCAAATCAT-AGTTTATACCTA 23392 ||| ||||| || ||||||||||||||||| ||| || || | |||| ||||| | Sbjct 168684 AAGTAATCTATCAGCAACAAATTCAATATATTGGGCCAT-AAGTCTTGAGTTCATACCAA 168742 Query 23393 TTAGTTTTACTGGAATCGCATCATATAAGAATAGTTT--TTCAATGGAAACAGCATCTTT 23450 | || | || |||| | ||| | ||||| ||||| ||||| |||||| ||| Sbjct 168743 TAAGATCAACAGGAAGAGAGTCACA-AAGAA-AGTTTCTTTCAACTTCAACAGCTTCTGA 168800 Query 23451 AATTATTTGAACAATAACTTCTTCACTAGGTG--GATATTTTAAATAC-------TTAAA 23501 || ||||| || | | ||||| | | || ||||||| ||| | Sbjct 168801 TATGATTTG---------TTGTACTCTAGGAGCTGGTAATTTAAATTTAAGGGCTTTATA 168851 Query 23502 CAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAA 23561 | |||||| ||||| ||| ||| || |||||||| | |||||| | |||||||||||| Sbjct 168852 TATTAAACAAGCAAAGTCAGCATGGAGACCTTCATCACGACTAATAAGTTCATTAGAAAA 168911 Query 23562 TGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGAT-CCGG 23620 ||| | ||| ||||| | ||| |||||||||| |||||| |||||| |||| | | || | Sbjct 168912 TGTGAGTCCAGGCATAAGTCCACGTTTTTTAAGCCAAAAAATTGCA-CAAAAGCTACCAG 168970 Query 23621 AAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTAT 23680 |||| | ||| || |||||||| || | | || | | | |||| | | | || Sbjct 168971 AAAATAGAATTCCTTCAACAGCACAGAATCCAATAATTCTTTCAGCAAAAGAT-CGTT-- 169027 Query 23681 AATCAGAA---ATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTT 23737 ||||| |||||||| ||| ||| | || ||| ||| ||| ||||| Sbjct 169028 ---CAGAATTCATCCATTTAGTTGCCCATTCTGCTTTCTTTTTAACAGCTTCAATATGAG 169084 Query 23738 CAATTGCTTTTAAGAGAAAAGTTTT---TTCTTCATTATCTGTTATATATGTATCAATTA 23794 |||||||| ||||| | ||| ||||| | |||| || |||||| ||||||| | Sbjct 169085 AAATTGCTTCAAAGAGCA---TTTGACGTTCTTTAATATCAGTAATATATCTATCAATAA 169141 Query 23795 GTAAACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATC 23854 |||| ||| ||||| ||| || | |||||||| || ||||| ||||| | || Sbjct 169142 GTAATGAATAAGTTTCACTATGTATTTGTTCAATAGACATTTGAAAAGCATAATACATTC 169201 Query 23855 TAGCTTCAGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATAC 23914 | ||||| | | ||| | || ||| || || ||||| ||||| ||||||| | Sbjct 169202 TGGCTTCTGGTATTTGTATTTCTCTAAGGAAATTTACTGCTAAGTTTTCCATAACAATGC 169261 Query 23915 CATCACTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAGTTGATA 23974 ||||||| ||||||||||| || | || ||||| ||||||||||||||| || || Sbjct 169262 CATCACTTGCAGCAAAGAATGCTAAGACGTATTTGATAAAATGTCTTTCA-GGGTCTTTA 169320 Query 23975 A-TTTTTTCCAATCATTAATATCTTTTGATAAATCAA---CTTCATCAACTGTCCAAAAA 24030 | ||| |||||| || |||||| || ||||| ||||| ||| |||||| Sbjct 169321 AGACTTTCCCAATCTCTAGTATCTTGACTTAGATCAATCTCTTCAGTAAC---CCAAAAT 169377 Query 24031 CTTGCCAAGGCACGCTTATACATTAGCCAAATATCATTA 24069 ||| || ||||||||| ||||||||| ||| Sbjct 169378 GATGCTTCAGCTTTTTTATACATTGACCAAATATCTTTA 169416 >seq24 Length=225370 Score = 199 bits (220), Expect = 4e-46 Identities = 198/256 (77%), Gaps = 13/256 (5%) Strand=Plus/Plus Query 8349 CTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCGCCTCC 8408 |||||| |||||||||||||| | || || ||| | | |||||||||| ||| | ||| Sbjct 19918 CTCTGTCGCCCAGGCTGGAGTACTGTAGCATGAACACAGCTCACTGCAGCCTTGACTTCC 19977 Query 8409 CGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGC------- 8461 || ||||| || |||| ||||||||||| | || ||||||| ||||||| Sbjct 19978 AGGACTCAAGTGATCCTCCCACCTCAGCCTCCTGGGTGGCTGGGACTACAGGCATGTACC 20037 Query 8462 ---AAAAGCCACCACGCCAAGCTAA-TTTTTGTATTTTTAGTAGAGAGAGGGTTTCACCA 8517 | ||||||||| | || ||| |||||||||||||| |||||| |||||||| || Sbjct 20038 TGTATTAGCCACCACATCTAGTTAATTTTTTGTATTTTTATTAGAGATGGGGTTTCAGCA 20097 Query 8518 TGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCATGTGATCCACCTGCCTCGGCCTCCCA 8577 |||| |||||| ||||| || ||||||||| |||||||| || ||||||||| ||| Sbjct 20098 TGTTAGCCAGGATGGTCATGATTTCCTGACCT--TGTGATCCGCCCCCCTCGGCCTTCCA 20155 Query 8578 AAGTGCTGGGATTACA 8593 |||||||||||||||| Sbjct 20156 AAGTGCTGGGATTACA 20171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521487654514200