Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001483535.1_202015-12- 30] 906 sequences; 8,691,536 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq382 152 1e-31 seq221 93.3 9e-14 >seq382 Length=3575 Score = 152 bits (168), Expect = 1e-31 Identities = 313/451 (69%), Gaps = 21/451 (5%) Strand=Plus/Minus Query 230198 TGTG-TGTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAAC 230256 |||| ||||||||| ||||| ||||| || || || || || || |||||||| || Sbjct 2054 TGTGCTGTTGAAGGAATTCTATTTTCTGGTAGCTTTTGTGCAATTTTTTGGCTT---AAA 1998 Query 230257 AAAGGTG---TGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGT 230313 ||| ||| | |||||||| ||| | ||||| || | || ||||| || || ||| Sbjct 1997 AAACGTGGACTTATGCCTGGACTCACATTTTCTAATGAACTTATTAGTCGTGATGAAGGT 1938 Query 230314 CTCCATCAACAGTTCGGCGAGCTTATGTATTCAAAGCTCCAGAAC--AAGCTACCA--TT 230369 |||||| | || | | | ||| ||| ||||| | || || ||||| | Sbjct 1937 CTCCATGCTGACTTTG-CTTGTTTAA-TATATAAAGCCCTTAAATTTAAATTACCAGCTC 1880 Query 230370 CGAGACGGTCAAACAAATCATTACAGAAGCAGTTGAAAACGAAAAGGAGTTCATTTGTGA 230429 | ||| || |||||||||| ||||||| |||||| |||| | || ||||||| Sbjct 1879 CTAGA--GTACAACAAATCATATCAGAAGCTGTTGAAGTTGAAAGAAACTTTCTTTGTGA 1822 Query 230430 CGCTATTCCATGTCGC-CTTATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAAT 230488 | || |||| ||| | |||||||| |||||| | |||||||| || || || |||| Sbjct 1821 CTCTCTTCC-TGTTGATCTTATTGGTATGAACTCAAGACTTATGGCCCAATATATTGAAT 1763 Query 230489 TCGTAGCCGACCGCATTTTTGTTGCACTTGGTTA--CGAGAAAGTGTACAACTCTAAGAA 230546 | || || || | | || |||| ||||| || | | ||| | |||||| | || Sbjct 1762 TTGTTGCTGATAGATTACTTTTTGC-CTTGGATATTCCAAAAA-TCTACAACGTTTCTAA 1705 Query 230547 CCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCG 230606 || |||| | ||||| || ||||| |||||||| || || ||||||||||||||| | Sbjct 1704 TCCTTTTGATTGGATGGACCTTATTTCACTTCAAGGTAAAACTAACTTCTTCGAAAAGAG 1645 Query 230607 TGTCAGTGACTATCAGAGGCCTGGTGTGATG 230637 || |||| ||||| | | |||| || ||| Sbjct 1644 AGTTGGTGAATATCAAATGGCTGGAGTTATG 1614 >seq221 Length=9066 Score = 93.3 bits (102), Expect = 9e-14 Identities = 305/463 (66%), Gaps = 11/463 (2%) Strand=Plus/Minus Query 281550 ATGTCTTTGGGATTATAACTGGGAATGTTAGTAGACCAACCGGTTCCAATACCACTTGAA 281609 || ||||| |||||||| | |||| | || |||||| || ||||| ||| | | Sbjct 2115 ATATCTTTTGGATTATAGTTAGGAACTGAACTACTCCAACCTGTACCAATTCCATCAGTA 2056 Query 281610 CCATTTACCAAAATACTCGGGATAATAGGTACATAACATTCTGGTTCAATTTTATCACCA 281669 |||||||||||||| | || || || || |||||| || |||||||||| | ||| Sbjct 2055 CCATTTACCAAAATCATTGGAATTATTGGAACATAATATAAAGGTTCAATTTGTTGTCCA 1996 Query 281670 TCATCATACAAAT-ACTTCAGAAGGTTATCATCTGTATCGACGAAAACCTGTCGCGTC-- 281726 |||||||| |||| | || | || | |||||| | || ||||| | || ||| Sbjct 1995 TCATCATATAAATAAGTTAATAAAG-GATCATCAGCCTCTGGGAAAATATATCTAGTCCA 1937 Query 281727 TTAGGGTTCAGTTTCGTGAAGATATACCTTGCACTCGCGTG-GTCTTTACCACCCTGCAG 281785 || | | || || || || ||||| | ||| | | || ||||| ||||| | Sbjct 1936 TTTAGAT--AGCTTAGTAAATATATAACGAGCA-GCACTTGCATCTTTTCCACCTTCTTT 1880 Query 281786 CCTCGACCCAAACTGACCCTCCGGCAACAACCAGTTAATGTTATTGCTCCCGACGTAATC 281845 || ||||| ||||| || ||| || | ||||| || || || ||| Sbjct 1879 TCTACTACCAAATTGACCACATGGTTCTAACAGATTTAGATTATTACTTCCAACAAAATT 1820 Query 281846 CTGAGCCAGGTTGACGATTGTCCCCTGAAGCGATACCTCACCGTGGTGATAGGCGCTGTG 281905 ||||||| || || || || | || | ||| || || || ||||| || || || Sbjct 1819 TTGAGCCATATTAACAATAGTACTTTGTAATGATGATTCTCCATGATGATAAGCACTATG 1760 Query 281906 TTCGGCAACATAACCACTGAACTGTGCTACCTTCACGTCTGATGTCAAGTTGCGTTTGAA 281965 ||| |||||||||||| || ||||| | ||| | || | | ||| | ||| || Sbjct 1759 TTCAGCAACATAACCAGCTAATTGTGC-AACTTTAAGTTCATTATTAAGCTTTTTTTAAA 1701 Query 281966 AG-CGCAATATAATACTTTTCGTTGAGAAGGCTTGAAACCATC 282007 | |||| | | |||||||| ||| ||| || |||||||| Sbjct 1700 TGTTGCAA-AAAGTACTTTTCTTTGTCCAGGTTTTAAACCATC 1659 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057811720646780