Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001483535.1_202015-12- 30] 906 sequences; 8,691,536 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq382 212 8e-50 seq276 178 2e-39 >seq382 Length=3575 Score = 212 bits (234), Expect = 8e-50 Identities = 588/881 (67%), Gaps = 43/881 (5%) Strand=Plus/Plus Query 33266 GTCTTCTTGA--GAC-ATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAA 33322 ||| |||||| ||| |||||||| |||| |||||||| || | |||||||| || Sbjct 1599 GTCATCTTGATTGACCATAACTCCAGCCATTTGATATTCACCAACTCTCTTTTCGAAGAA 1658 Query 33323 ATTAGTTTTTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTGTA 33382 |||||||| |||| | ||| ||| ||||| ||||||| ||||| | ||| ||||| Sbjct 1659 GTTAGTTTTACCTTGAAGTGAAATAAGGTCCATCCAATCAAAAGGATTAGAAACGTTGTA 1718 Query 33383 AAtttttttAAATCCCAATTCAGAAATCAATCTATCTGCGACGAATTCTATATATGTTTT 33442 |||||| || |||| || ||| |||||||| || || ||||| |||||| Sbjct 1719 GATTTTTGGAATATCCAAGGCAAAAAGTAATCTATCAGCAACAAATTCAATATATTGGGC 1778 Query 33443 CATCATTTCACAATTCATTCCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTG 33502 ||| | | | ||||| || || || | ||| ||||||| || |||||| | | Sbjct 1779 CATAAGTCTTGAGTTCATACCAATAAGATCAACAGGAAGAGAGTCACAAAGAAAGTTTCT 1838 Query 33503 TTCAATGGATACCGCATTTGTTATAATAAATCTAACGGTTTCTTCACTCGGTGG--ATGT 33560 ||||| || || | || ||| || | || ||| | | ||| || | Sbjct 1839 TTCAACTTCAACAGCTTCTGATATGATTTGTTGTAC----TCT--AGGAGCTGGTAATTT 1892 Query 33561 AA---TAAATG-TTTAAACATCAAACATGCGAAATC-GCAGTGCAGACCCTCGTCTCTAC 33615 || ||| | |||| | || ||||| || || || ||| || ||||| || || | || Sbjct 1893 AAATTTAAGGGCTTTATATATTAAACAAGCAAAGTCAGCA-TGGAGACCTTCATCACGAC 1951 Query 33616 TAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATA 33675 |||| | ||| |||||||| |||||||| ||||| || ||||| |||||||||||||| | Sbjct 1952 TAATAAGTTCATTAGAAAATGTGAGTCCAGGCATAAGTCCACGTTTTTTAAGCCAAAAAA 2011 Query 33676 TGGAAGCGAATGAT-CCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTC 33734 | | | | || | | || ||||| | |||||||| || ||| || |||||| ||| Sbjct 2012 TTGCA-CAAAAGCTACCAGAAAATAGAATTCCTTCAACAGCACAGAATCCAATAATTCTT 2070 Query 33735 TCTCCATAACCGGCGCTGTC---ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTT 33791 || || || | | || || ||||| || ||||| || || |||||||| Sbjct 2071 TCAGCAAAA---GATCGTTCAGAATTCATCCATTTAGTTGCCCATTCTGCTTTCTTTTTA 2127 Query 33792 ACACAAGGCATCGTT----TCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTT 33847 ||| || || | || || | |||||| | ||| ||| |||| | Sbjct 2128 ACA----GCTTCAATATGAGAAATTGCTTCAAAGAGCATTTGACGTTCTTTAATATCAGT 2183 Query 33848 AACATAAGTATCGATCA--AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATC 33905 || ||| |||| || | || || ||| |||| ||| || | |||||| | ||| Sbjct 2184 AATATATCTATCAATAAGTAATGA--ATAAGTTTCACTATGTATTTGTTCAATAGACATT 2241 Query 33906 TGAAATCCGTAGAAACA-TCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCTGC 33964 ||||| | || | ||| ||| || || | || || | |||| || || | |||| Sbjct 2242 TGAAAAGCATA-ATACATTCTGGCTTCTGGTATTTGTATTTCTCTAAGGAAATTTACTGC 2300 Query 33965 TAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAA 34024 ||| ||||| | || || |||||||| || ||||| || || || || | ||| ||||| Sbjct 2301 TAAGTTTTCCATAACAATGCCATCACTTGCAGCAAAGAATGCTAAGACGTATTTGATAAA 2360 Query 34025 ATATTTTTCGTCTGGTGTT--AGTTTATTCCAATCATTGATATCTTTAGATATATCCACT 34082 || | |||| ||| || || | | |||||| | |||||| | || ||| | Sbjct 2361 ATGTCTTTC--AGGGTCTTTAAGACTTTCCCAATCTCTAGTATCTTGACTTAGATCAATC 2418 Query 34083 TCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACAT 34123 ||||| |||||||||||| || || ||||||||||| Sbjct 2419 TCTTCAGTAACCCAAAATGATGCTTCAGCTTTTTTATACAT 2459 >seq276 Length=6140 Score = 178 bits (196), Expect = 2e-39 Identities = 696/1081 (64%), Gaps = 28/1081 (3%) Strand=Plus/Minus Query 62045 TGTGAATTGAATGGGAGCGGAT-GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTA 62103 ||| ||||| ||||| ||| | ||| || || | | ||| || || || ||||||| Sbjct 1269 TGTAAATTGTATGGG-GCGTGTCGCGCTTTGGGTCCTCAAATAATAAATGCCTGTTTTTA 1211 Query 62104 GACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTA 62163 |||| |||| || |||||||||||| | || || | | | | | || | | | Sbjct 1210 GACCTTTTTTCCAACCATAAAAATGCATAGATGATAACTTTGCAAAGTTAGCATTTTCCA 1151 Query 62164 TATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTA 62223 ||||||| |||| |||||| |||| | | | ||||| ||||||||||| | | Sbjct 1150 TATGGATGTTCAAAGATTGCGATTGACAAACATATGGACCCCTATCTGCAGCCATATCAA 1091 Query 62224 TGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAA-CTCGCTTAATATCTTCTGGA 62282 | | |||||||| |||||||| | ||| ||||||| ||| | | ||||| || ||| Sbjct 1090 TTACTGTCTTTTGCTTGATTTCCCATACAGTCTTATAAAGCTCACGT-ATATCCTCCGGA 1032 Query 62283 A-GGT--TTGTATTCTGAATGGATCCACCATCTACCATAATCCTATTCTTGATCTCATCA 62339 | || | |||| ||||| ||| || | | ||||| | | || | | |||| Sbjct 1031 ATTGTAAGTATATTTTGAATACTGCCATTATTTGCAATAATATTCTGTTTAAGCCTATCA 972 Query 62340 TTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCT 62399 | |||||| ||| |||| | | || | ||||| || ||||| ||| || Sbjct 971 TCCCATAACCCAAGCTCTAGTAAATCATTTAGCAAGTGCGGATTTACTACAAAGAACTCA 912 Query 62400 CCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTT 62459 ||||| | ||| || ||| ||||| || ||| | || || | |||||| || Sbjct 911 CCAGATAGTACCCTACGATGATAAATGTTCGAGGTGAATGGCTCAAAACTCTCATTGTTA 852 Query 62460 CCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGA 62519 || |||||||| | ||| ||||| || ||||| || | | ||||| | ||| | || | Sbjct 851 CCTAAAATTTGTGAAGTGGATGCTGTTGGCATTGGAGATATCAATAGAGAATTACGAATA 792 Query 62520 CCGTATGTTCTGATTTTATCTTTTAGATGTTCCCAATTCCAAAGATCCGA---CGGTACA 62576 || ||| | || ||||||| || ||||||| ||||| | || ||| | Sbjct 791 CCATATTTGGAAATCCTATCTTTAAGCGAATCCCAATCACAAAGTCCAGAGTCTGGTGTA 732 Query 62577 ACANNNNNNNNNNNATATTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCA 62636 || | |||||| |||||| ||||| || ||| || |||||| || Sbjct 731 ACTCCCCACATATCAAATTGTAAAATACCCTTACTCGCAGGCGAACCGGAATATGTTTCG 672 Query 62637 TATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTAATAAATGGTT 62696 ||||| || | || || || || | ||| || || || | || | ||||| || | Sbjct 671 TATGGACCATATTTTTCTGCAAGCTCACAGCTAGCATCGAGAGCTGCATAATAGATAACT 612 Query 62697 TCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGG-ATAATTTAAG-A 62754 |||||||| | ||||||| | | ||| || || |||| ||| ||| | Sbjct 611 TCAAAGATTTGTTTATTTAACTTCTTAGCTCCCTCAGACTCGTATGGCATA--CGAAGCA 554 Query 62755 GAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAG 62814 || || ||| || | ||||||| ||||| || | || | |||||| ||| | Sbjct 553 TCATGAAACAGTCTGCGAGCCCTTGAATGCCAATCCCCAATGGACGATGTCTTAAATTCG 494 Query 62815 AGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGA 62874 || ||| | |||| || || |||||| || || || | |||||| | ||| || Sbjct 493 AGTTTTTACATTCTTTAAGAGAATAATATCCAACGTCAATCAATTTATTCAAATTCCTCG 434 Query 62875 CAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTATT------- 62927 ||| || || || || || | || ||||||||| || | |||| Sbjct 433 TAATCACCTTCGTAACTTCTTTTAACTTATCAAAATCAAA-CGTCTTGTTATTTTTATCA 375 Query 62928 ACAAACATGTTCAATG-CAACAGATGCCAGATTACACACGGCTACCTCAT--TAGCATCC 62984 || ||| | | || | ||| ||| ||||||||||| ||||| || || | | || Sbjct 374 ACGAAC-TTTGGAAGGCCAATAGACGCCAGATTACAAACGGCAACTTCGTCCTTGC--TA 318 Query 62985 GCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGA 63044 | |||| ||| || || ||||| | ||||| | |||||||| ||||||| || Sbjct 317 GTGTATTCTATGATTTCTGTGCATAAGTTACTTGAAACAATAGTTCCCAAATTTTTCTGG 258 Query 63045 TTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGA 63104 ||||| || | || ||||| |||||| ||| ||||| || || || ||||| ||| Sbjct 257 TTACTTTTGCTATTTGCAGCATCTTTATAACAAATAAATGGTGTCCCCGTCTCAATTTGA 198 Query 63105 G 63105 | Sbjct 197 G 197 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629810467315680