Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001483535.1_202015-12- 30] 906 sequences; 8,691,536 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq382 233 3e-56 seq276 197 2e-45 >seq382 Length=3575 Score = 233 bits (258), Expect = 3e-56 Identities = 589/877 (67%), Gaps = 35/877 (4%) Strand=Plus/Plus Query 35842 GTCTTCTTGA--GAC-ATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAA 35898 ||| |||||| ||| |||||||| |||| |||||||| || | |||||||| || Sbjct 1599 GTCATCTTGATTGACCATAACTCCAGCCATTTGATATTCACCAACTCTCTTTTCGAAGAA 1658 Query 35899 ATTAGTTTTACCTTCTAATGATATATTTTCCATGAAATCGAATGGATTGATAACATTATA 35958 ||||||||||||| | ||| ||| ||||| |||| || ||||| ||| || || Sbjct 1659 GTTAGTTTTACCTTGAAGTGAAATAAGGTCCATCCAATCAAAAGGATTAGAAACGTTGTA 1718 Query 35959 AAtttttttAAATCCCAATTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTT 36018 |||||| || |||| || ||| |||||||| || |||||||| |||||| Sbjct 1719 GATTTTTGGAATATCCAAGGCAAAAAGTAATCTATCAGCAACAAATTCAATATATTGGGC 1778 Query 36019 CATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTG 36078 ||| | | | ||||| || ||||| | ||| ||||||| || |||||| | | Sbjct 1779 CATAAGTCTTGAGTTCATACCAATAAGATCAACAGGAAGAGAGTCACAAAGAAAGTTTCT 1838 Query 36079 TTCAATAGAGACCGCGTCTGTTATAATAGATATTACTGTTTCTTCACTCGGTGG----AT 36134 ||||| || || |||| ||| || || || | || | | ||| | Sbjct 1839 TTCAACTTCAACAGCTTCTGATATGAT-----TTGTTG-TACTCTAGGAGCTGGTAATTT 1892 Query 36135 ACAATAAATG--TTTAAACATCAAACATGCGAAATC-GCAGTGTAGACCCTCGTCTCTAC 36191 | | | || | |||| | || ||||| || || || ||| || ||||| || || | || Sbjct 1893 AAATTTAAGGGCTTTATATATTAAACAAGCAAAGTCAGCA-TGGAGACCTTCATCACGAC 1951 Query 36192 TAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATA 36251 |||| | ||| || ||||| |||||||| ||||| || ||||| |||||||||||||| | Sbjct 1952 TAATAAGTTCATTAGAAAATGTGAGTCCAGGCATAAGTCCACGTTTTTTAAGCCAAAAAA 2011 Query 36252 TGGACGCAAATGAT-CCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTC 36310 | | | |||| | | |||||||| | ||||||||| || || || |||||| ||| Sbjct 2012 TTG-CACAAAAGCTACCAGAAAATAGAATTCCTTCAACAGCACAGAATCCAATAATTCTT 2070 Query 36311 TCTCCATAACCGGCACTGTC---ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTT 36367 || || || | | || || ||||| || ||||| || || |||||||| Sbjct 2071 TCAGCAAAA---GATCGTTCAGAATTCATCCATTTAGTTGCCCATTCTGCTTTCTTTTTA 2127 Query 36368 ACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACA 36427 ||| || || || | |||||| | ||| ||| |||| ||| | Sbjct 2128 ACAGCTTCAATATGAGAAATTGCTTCAAAGAGCATTTGACGTTCTTTAATATCAGTAATA 2187 Query 36428 TATGTATCAATCA--AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAA 36485 ||| ||||||| | || || ||| |||| ||| || | |||||| | |||||||| Sbjct 2188 TATCTATCAATAAGTAATGA--ATAAGTTTCACTATGTATTTGTTCAATAGACATTTGAA 2245 Query 36486 ATCCGTAGAAACA-TCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAA 36544 | | || | ||| ||| || || | || |||| |||| || || | ||||||| Sbjct 2246 AAGCATA-ATACATTCTGGCTTCTGGTATTTGTATTTCTCTAAGGAAATTTACTGCTAAG 2304 Query 36545 TTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATAT 36604 ||||| | || || || ||||| || ||||| || || || || | ||| ||||||| | Sbjct 2305 TTTTCCATAACAATGCCATCACTTGCAGCAAAGAATGCTAAGACGTATTTGATAAAATGT 2364 Query 36605 TTTTCGTTTGGTGTT--AGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTT 36662 |||| ||| || || | | |||||| | |||||| | || ||| | |||| Sbjct 2365 CTTTC--AGGGTCTTTAAGACTTTCCCAATCTCTAGTATCTTGACTTAGATCAATCTCTT 2422 Query 36663 CCACTGTCCAAAATGATGCCTCTGCCTTTTTATACAT 36699 | |||||||||||| || || ||||||||||| Sbjct 2423 CAGTAACCCAAAATGATGCTTCAGCTTTTTTATACAT 2459 >seq276 Length=6140 Score = 197 bits (218), Expect = 2e-45 Identities = 702/1083 (65%), Gaps = 32/1083 (3%) Strand=Plus/Minus Query 64838 TGTGAATTGAATGGGAGCGGAT-GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTA 64896 ||| ||||| ||||| ||| | ||| || || | | ||| || || || ||||||| Sbjct 1269 TGTAAATTGTATGGG-GCGTGTCGCGCTTTGGGTCCTCAAATAATAAATGCCTGTTTTTA 1211 Query 64897 GACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTA 64956 |||| |||| || |||||||||||| | || || | | | | | || | | | Sbjct 1210 GACCTTTTTTCCAACCATAAAAATGCATAGATGATAACTTTGCAAAGTTAGCATTTTCCA 1151 Query 64957 TATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTA 65016 ||||||| |||| |||||| |||| | | | ||||| ||||||||||| | | Sbjct 1150 TATGGATGTTCAAAGATTGCGATTGACAAACATATGGACCCCTATCTGCAGCCATATCAA 1091 Query 65017 TGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAA-CTCGCTTAATATCTTCTGGA 65075 | | |||||||| |||||||| | ||| ||||||| ||| | | ||||| || ||| Sbjct 1090 TTACTGTCTTTTGCTTGATTTCCCATACAGTCTTATAAAGCTCACGT-ATATCCTCCGGA 1032 Query 65076 A-GGT--TTGTATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCA 65132 | || | |||| ||||| ||| || ||| ||||| | | || | | |||| Sbjct 1031 ATTGTAAGTATATTTTGAATACTGCCATTATTTGCAATAATATTCTGTTTAAGCCTATCA 972 Query 65133 TTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCT 65192 | |||||| ||| |||| | | || | |||||||| ||||| || || Sbjct 971 TCCCATAACCCAAGCTCTAGTAAATCATTTAGCAAGTGCGGATTTACTACAAAGAACTCA 912 Query 65193 CCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTT 65252 ||||| | ||| || ||| ||||| || ||| | || || | | |||||| || Sbjct 911 CCAGATAGTACCCTACGATGATAAATGTTCGAGGTGAATGGCTCAAAACTCTCATTGTTA 852 Query 65253 CCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGA 65312 || |||||||| | ||| ||||| || ||||| || | | ||||| | ||| | || | Sbjct 851 CCTAAAATTTGTGAAGTGGATGCTGTTGGCATTGGAGATATCAATAGAGAATTACGAATA 792 Query 65313 CCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGA---CGGTACA 65369 || ||| | || ||||||| || | ||||||| ||||| | || ||| | Sbjct 791 CCATATTTGGAAATCCTATCTTTAAGCGAATCCCAATCACAAAGTCCAGAGTCTGGTGTA 732 Query 65370 ACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCG 65429 || ||||| |||||| ||||| || ||| || |||||| ||| Sbjct 731 ACTCCCCACATATCAAATTGTAAAATACCCTTACTCGCAGGCGAACCGGAATATGTTTCG 672 Query 65430 TATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTT 65489 ||||| || | || || || || ||||| || || || | || | ||||| || | Sbjct 671 TATGGACCATATTTTTCTGCAAGCTCACAGCTAGCATCGAGAGCTGCATAATAGATAACT 612 Query 65490 TCGAAGATCTTCTTATTTAGATCTTGTGCTTC--CAGGCTATCAAATGG-ATAATTTAAG 65546 || ||||| | ||||||| | | ||| | ||| | || |||| ||| ||| Sbjct 611 TCAAAGATTTGTTTATTTAACTTCTTAGCTCCCTCAGAC--TCGTATGGCATA--CGAAG 556 Query 65547 -AGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATT 65605 | || || |||||| | ||||||| ||||| || | || | |||||| ||| Sbjct 555 CATCATGAAACAGTCTGCGAGCCCTTGAATGCCAATCCCCAATGGACGATGTCTTAAATT 496 Query 65606 AGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCT 65665 ||| ||| | |||| || || |||||| || || || | |||||| | ||| || Sbjct 495 CGAGTTTTTACATTCTTTAAGAGAATAATATCCAACGTCAATCAATTTATTCAAATTCCT 436 Query 65666 GACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCTCATCTATT----- 65720 ||| || || || || || | || ||||||||| || | |||| Sbjct 435 CGTAATCACCTTCGTAACTTCTTTTAACTTATCAAAATCAAACGTCTTGT-TATTTTTAT 377 Query 65721 --ACAAACATGTTCAATG-CAACAGATGCCAGATTACAAACGGCTACCTCAT--TAGCAT 65775 || ||| | | || | ||| ||| ||||||||||||||||| || || | | || Sbjct 376 CAACGAAC-TTTGGAAGGCCAATAGACGCCAGATTACAAACGGCAACTTCGTCCTTGC-- 320 Query 65776 CCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTT 65835 | |||| ||| || || ||||| | ||||| | || ||||| ||||||| | Sbjct 319 TAGTGTATTCTATGATTTCTGTGCATAAGTTACTTGAAACAATAGTTCCCAAATTTTTCT 260 Query 65836 GATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCT 65895 | ||||| || | || ||||| |||||| ||| ||||| || || || ||||| | Sbjct 259 GGTTACTTTTGCTATTTGCAGCATCTTTATAACAAATAAATGGTGTCCCCGTCTCAATTT 200 Query 65896 GAG 65898 ||| Sbjct 199 GAG 197 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658165346193040