Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001483535.1_202015-12- 30] 906 sequences; 8,691,536 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq382 214 3e-50 seq276 210 3e-49 >seq382 Length=3575 Score = 214 bits (236), Expect = 3e-50 Identities = 587/881 (67%), Gaps = 45/881 (5%) Strand=Plus/Plus Query 49645 TCTTCTTGA--GAC-ATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAA 49701 || |||||| ||| |||||||| |||| |||||||| || | |||||||| || Sbjct 1600 TCATCTTGATTGACCATAACTCCAGCCATTTGATATTCACCAACTCTCTTTTCGAAGAAG 1659 Query 49702 TTAGTTTTTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAA 49761 |||||||| |||| | ||| ||| ||||| ||||||| ||||| | ||| || || Sbjct 1660 TTAGTTTTACCTTGAAGTGAAATAAGGTCCATCCAATCAAAAGGATTAGAAACGTTGTAG 1719 Query 49762 AtttttttAAATCCCAATTCAGAAATCAATCTATCCGCGACAAATTCTATATATGTTTTC 49821 |||||| || |||| || ||| |||||||| || |||||||| |||||| | Sbjct 1720 ATTTTTGGAATATCCAAGGCAAAAAGTAATCTATCAGCAACAAATTCAATATATTGGGCC 1779 Query 49822 ATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGT 49881 || | | | ||||| || ||||| | ||| ||||||| || |||||| | | | Sbjct 1780 ATAAGTCTTGAGTTCATACCAATAAGATCAACAGGAAGAGAGTCACAAAGAAAGTTTCTT 1839 Query 49882 TCAATGGATACCGCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAAT 49941 |||| || || |||| ||| ||| | || | | || || | | ||| Sbjct 1840 TCAACTTCAACAGCTTCTGATAT----GATTTG-----TTGTACTCTAGGAGCTGGTAAT 1890 Query 49942 --AAATGT-------TTAAACATCAAACATGCGAAATC-GCAGTGCAGACCCTCGTCTCT 49991 |||| | ||| | || ||||| || || || ||| || ||||| || || | Sbjct 1891 TTAAATTTAAGGGCTTTATATATTAAACAAGCAAAGTCAGCA-TGGAGACCTTCATCACG 1949 Query 49992 ACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAA 50051 |||||| ||||| || ||||| |||||||| ||||| || ||||| |||||||||||||| Sbjct 1950 ACTAATAAGTTCATTAGAAAATGTGAGTCCAGGCATAAGTCCACGTTTTTTAAGCCAAAA 2009 Query 50052 TATGGACGCAAATG-ACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTC 50110 || | | |||| | |||||||| | |||||||| || || || ||| || || Sbjct 2010 AATTG-CACAAAAGCTACCAGAAAATAGAATTCCTTCAACAGCACAGAATCCAATAATTC 2068 Query 50111 TCTCTCCATAA-CTGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTT 50169 | || || || | | | | || ||||| || ||||| || || |||||||| Sbjct 2069 TTTCAGCAAAAGATCGTTCAG-AATTCATCCATTTAGTTGCCCATTCTGCTTTCTTTTTA 2127 Query 50170 ACACAAGGCATCGTT----TCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTT 50225 ||| || || | || || | |||||| | ||| ||| |||| | Sbjct 2128 ACA----GCTTCAATATGAGAAATTGCTTCAAAGAGCATTTGACGTTCTTTAATATCAGT 2183 Query 50226 AACATAAGTATCGATCA--AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATC 50283 || ||| |||| || | || || ||| |||| ||| || | |||||| | ||| Sbjct 2184 AATATATCTATCAATAAGTAATGA--ATAAGTTTCACTATGTATTTGTTCAATAGACATT 2241 Query 50284 TGAAATCCGTAGAAACA-TCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCAGC 50342 ||||| | || | ||| ||| || || | || || | |||| || || | | || Sbjct 2242 TGAAAAGCATA-ATACATTCTGGCTTCTGGTATTTGTATTTCTCTAAGGAAATTTACTGC 2300 Query 50343 TAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAA 50402 ||| ||||| | || || || ||||| || ||||| || || || || | ||| ||||| Sbjct 2301 TAAGTTTTCCATAACAATGCCATCACTTGCAGCAAAGAATGCTAAGACGTATTTGATAAA 2360 Query 50403 ATGTTTTTCGTTGGGTGTT--AGTTTATTCCAATCATTGATATCTTTAGATATATCTACT 50460 |||| |||| |||| || || | | |||||| | |||||| | || ||| | Sbjct 2361 ATGTCTTTC--AGGGTCTTTAAGACTTTCCCAATCTCTAGTATCTTGACTTAGATCAATC 2418 Query 50461 TCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACAT 50501 ||||| |||||||||||| || || ||||||||||| Sbjct 2419 TCTTCAGTAACCCAAAATGATGCTTCAGCTTTTTTATACAT 2459 >seq276 Length=6140 Score = 210 bits (232), Expect = 3e-49 Identities = 708/1083 (65%), Gaps = 32/1083 (3%) Strand=Plus/Minus Query 78717 TGTGAATTGAATGGGAGCGGAT-GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTA 78775 ||| ||||| ||||| ||| | ||| || || | | ||| || || || ||||||| Sbjct 1269 TGTAAATTGTATGGG-GCGTGTCGCGCTTTGGGTCCTCAAATAATAAATGCCTGTTTTTA 1211 Query 78776 GACCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTA 78835 |||| |||| || || ||||||||| | || || | | | | | || | | | Sbjct 1210 GACCTTTTTTCCAACCATAAAAATGCATAGATGATAACTTTGCAAAGTTAGCATTTTCCA 1151 Query 78836 TATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTA 78895 ||||||| |||| |||||| |||| | | | ||||| ||||||||||| | | Sbjct 1150 TATGGATGTTCAAAGATTGCGATTGACAAACATATGGACCCCTATCTGCAGCCATATCAA 1091 Query 78896 TGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAA-CTCGCTTAATATCTTCTGGA 78954 | | |||||||| |||||||| | ||| ||||||| ||| | | ||||| || ||| Sbjct 1090 TTACTGTCTTTTGCTTGATTTCCCATACAGTCTTATAAAGCTCACGT-ATATCCTCCGGA 1032 Query 78955 A-GGT--TTGTATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCTTCA 79011 | || | |||| ||||| ||| || ||| ||||| | | || | | ||| Sbjct 1031 ATTGTAAGTATATTTTGAATACTGCCATTATTTGCAATAATATTCTGTTTAAGCCTATCA 972 Query 79012 TTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCT 79071 | |||||| ||| |||| | | || | |||||||| ||||| || || Sbjct 971 TCCCATAACCCAAGCTCTAGTAAATCATTTAGCAAGTGCGGATTTACTACAAAGAACTCA 912 Query 79072 CCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTATTT 79131 ||||| | ||| || ||| ||||| || ||| |||| || | ||||| || Sbjct 911 CCAGATAGTACCCTACGATGATAAATGTTCGAGGTGAATGGCTCAAAACTCTCATTGTTA 852 Query 79132 CCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGA 79191 || |||||||| | ||| ||||| |||||||| || | | ||||| | ||| | || | Sbjct 851 CCTAAAATTTGTGAAGTGGATGCTGTTGGCATTGGAGATATCAATAGAGAATTACGAATA 792 Query 79192 CCGTATGATCTGATTTTATCTTTTAGAGATTCCCAATCCCAAAGATCAGA---CGGGACA 79248 || ||| || ||||||| || || |||||||| ||||| |||| || | Sbjct 791 CCATATTTGGAAATCCTATCTTTAAGCGAATCCCAATCACAAAGTCCAGAGTCTGGTGTA 732 Query 79249 ACATTCCAAAGATCATATTGTAGAATACCGTTACTAGCGTATGATCCTGTGTATGTTTCA 79308 || ||| | |||| |||||| |||||| ||||| || || || | |||||||| Sbjct 731 ACTCCCCACATATCAAATTGTAAAATACCCTTACTCGCAGGCGAACCGGAATATGTTTCG 672 Query 79309 TAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAATAAATGGTT 79368 || || || | ||||| || | ||||| || || || | ||| | ||||| || | Sbjct 671 TATGGACCATATTTTTCTGCAAGCTCACAGCTAGCATCGAGAGCTGCATAATAGATAACT 612 Query 79369 TCGAAAATCTTCTTATTGAGATCTTGTGCTTC--TAGGCTATCAAATGG-ATAATTTAAG 79425 || || || | ||||| | | | ||| | || | || |||| ||| ||| Sbjct 611 TCAAAGATTTGTTTATTTAACTTCTTAGCTCCCTCAGAC--TCGTATGGCATA--CGAAG 556 Query 79426 -AGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATT 79484 | || || |||||| | ||||||| ||||| || | || | |||||| ||| Sbjct 555 CATCATGAAACAGTCTGCGAGCCCTTGAATGCCAATCCCCAATGGACGATGTCTTAAATT 496 Query 79485 AGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTCCT 79544 || ||| | |||| || || |||||| || || || | |||||| | |||||| Sbjct 495 CGAGTTTTTACATTCTTTAAGAGAATAATATCCAACGTCAATCAATTTATTCAAATTCCT 436 Query 79545 GACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCGTCCATCTATT----- 79599 || || || || || |||| || ||||||||| |||| |||| Sbjct 435 CGTAATCACCTTCGTAACTTCTTTTAACTTATCAAAATCAAA-CGTCTTGTTATTTTTAT 377 Query 79600 --ACAAACATGTTCAACG-CGACAGATGCCAGATTACAAACGGCTACCTCAT--TAGCAT 79654 || ||| | | || | | | ||| ||||||||||||||||| || || | | || Sbjct 376 CAACGAAC-TTTGGAAGGCCAATAGACGCCAGATTACAAACGGCAACTTCGTCCTTGC-- 320 Query 79655 CCGCATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTT 79714 | |||| ||| ||||| ||||| | |||||| | ||| ||||| ||||||| | Sbjct 319 TAGTGTATTCTATGATTTCTGTGCATAAGTTACTTGAAACAATAGTTCCCAAATTTTTCT 260 Query 79715 GATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCT 79774 | ||||| || | || ||||| |||||| ||| || || || || || ||||| | Sbjct 259 GGTTACTTTTGCTATTTGCAGCATCTTTATAACAAATAAATGGTGTCCCCGTCTCAATTT 200 Query 79775 GAG 79777 ||| Sbjct 199 GAG 197 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718260665605840