Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001483535.1_202015-12- 30] 906 sequences; 8,691,536 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq382 208 9e-49 seq276 197 2e-45 >seq382 Length=3575 Score = 208 bits (230), Expect = 9e-49 Identities = 586/883 (66%), Gaps = 49/883 (6%) Strand=Plus/Plus Query 32989 TCTTCTTGA--GAC-ATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAA 33045 || |||||| ||| |||||||| |||| |||||||| || | |||||||| || Sbjct 1600 TCATCTTGATTGACCATAACTCCAGCCATTTGATATTCACCAACTCTCTTTTCGAAGAAG 1659 Query 33046 TTAGTTTTTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAA 33105 |||||||| |||| | ||| ||| ||||| ||||||| ||||| | ||| || || Sbjct 1660 TTAGTTTTACCTTGAAGTGAAATAAGGTCCATCCAATCAAAAGGATTAGAAACGTTGTAG 1719 Query 33106 AtttttttAAATCCCAATTCAGAAATCAATCTATCCGCGACGAATTCTATATATGTTTTC 33165 |||||| || |||| || ||| |||||||| || || ||||| |||||| | Sbjct 1720 ATTTTTGGAATATCCAAGGCAAAAAGTAATCTATCAGCAACAAATTCAATATATTGGGCC 1779 Query 33166 ATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGT 33225 || | | | ||||| || ||||| | ||| ||||||| || |||||| | | | Sbjct 1780 ATAAGTCTTGAGTTCATACCAATAAGATCAACAGGAAGAGAGTCACAAAGAAAGTTTCTT 1839 Query 33226 TCAATGGATACCGCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAAT 33285 |||| || || |||| ||| ||| | || | | || || | | ||| Sbjct 1840 TCAACTTCAACAGCTTCTGATAT----GATTTG-----TTGTACTCTAGGAGCTGGTAAT 1890 Query 33286 --AAATGT-------TTAAACATCAAACATGCGAAATC-GCAGTGCAGACCCTCGTCTCT 33335 |||| | ||| | || ||||| || || || ||| || ||||| || || | Sbjct 1891 TTAAATTTAAGGGCTTTATATATTAAACAAGCAAAGTCAGCA-TGGAGACCTTCATCACG 1949 Query 33336 ACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAA 33395 |||||| ||||| || ||||| |||||||| ||||| || ||||| |||||||||||||| Sbjct 1950 ACTAATAAGTTCATTAGAAAATGTGAGTCCAGGCATAAGTCCACGTTTTTTAAGCCAAAA 2009 Query 33396 TATGGAAGCGAATGAT-CCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTC 33454 || | | | || | | |||||||| | |||||||| || ||| || |||||| || Sbjct 2010 AATTGCA-CAAAAGCTACCAGAAAATAGAATTCCTTCAACAGCACAGAATCCAATAATTC 2068 Query 33455 TCTCTCCATAACCGGCGCTGTC---ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTT 33511 | || || || | | || || ||||| || ||||| || || ||||||| Sbjct 2069 TTTCAGCAAAA---GATCGTTCAGAATTCATCCATTTAGTTGCCCATTCTGCTTTCTTTT 2125 Query 33512 TTACACAAGGCATCGTT----TCTATGGCATTAAAGAGATAGtttttttCATTACTATCT 33567 | ||| || || | || || | |||||| | ||| ||| |||| Sbjct 2126 TAACA----GCTTCAATATGAGAAATTGCTTCAAAGAGCATTTGACGTTCTTTAATATCA 2181 Query 33568 TTAACATAAGTATCGATCA--AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCA 33625 ||| ||| |||| || | || || ||| |||| ||| || | |||||| | || Sbjct 2182 GTAATATATCTATCAATAAGTAATGA--ATAAGTTTCACTATGTATTTGTTCAATAGACA 2239 Query 33626 TCTGAAATCCGTAGAAACA-TCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCC 33684 | ||||| | || | ||| ||| || || | || |||| |||| || || | | Sbjct 2240 TTTGAAAAGCATA-ATACATTCTGGCTTCTGGTATTTGTATTTCTCTAAGGAAATTTACT 2298 Query 33685 GCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATA 33744 || || ||||| | || || || ||||| || ||||| || || || || | ||| ||| Sbjct 2299 GCTAAGTTTTCCATAACAATGCCATCACTTGCAGCAAAGAATGCTAAGACGTATTTGATA 2358 Query 33745 AAATATTTTTCGTCTGGTGTT--AGTTTATTCCAATCATTGATATCTTTAGATATATCTA 33802 |||| | |||| ||| || || | | |||||| | |||||| | || ||| | Sbjct 2359 AAATGTCTTTC--AGGGTCTTTAAGACTTTCCCAATCTCTAGTATCTTGACTTAGATCAA 2416 Query 33803 CTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACAT 33845 ||||| |||||||||||| || || ||||||||||| Sbjct 2417 TCTCTTCAGTAACCCAAAATGATGCTTCAGCTTTTTTATACAT 2459 >seq276 Length=6140 Score = 197 bits (218), Expect = 2e-45 Identities = 702/1083 (65%), Gaps = 32/1083 (3%) Strand=Plus/Minus Query 61994 TGTGAATTGAATGGGAGCGGAT-GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTA 62052 ||| ||||| ||||| ||| | ||| || || | | ||| || || || ||||||| Sbjct 1269 TGTAAATTGTATGGG-GCGTGTCGCGCTTTGGGTCCTCAAATAATAAATGCCTGTTTTTA 1211 Query 62053 GACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTA 62112 |||| |||| || |||||||||||| | || || | | | | | || | | | Sbjct 1210 GACCTTTTTTCCAACCATAAAAATGCATAGATGATAACTTTGCAAAGTTAGCATTTTCCA 1151 Query 62113 TATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTA 62172 ||||||| |||| |||||| |||| | | | ||||| ||||||||||| | | Sbjct 1150 TATGGATGTTCAAAGATTGCGATTGACAAACATATGGACCCCTATCTGCAGCCATATCAA 1091 Query 62173 TGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAA-CTCGCTTAATATCTTCTGGA 62231 | | |||||||| |||||||| | ||| ||||||| ||| | | ||||| || ||| Sbjct 1090 TTACTGTCTTTTGCTTGATTTCCCATACAGTCTTATAAAGCTCACGT-ATATCCTCCGGA 1032 Query 62232 A-GGT--TTGTATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCA 62288 | || | |||| ||||| ||| || ||| ||||| | | || | | |||| Sbjct 1031 ATTGTAAGTATATTTTGAATACTGCCATTATTTGCAATAATATTCTGTTTAAGCCTATCA 972 Query 62289 TTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCT 62348 | |||||| ||| |||| | | || | |||||||| ||||| || || Sbjct 971 TCCCATAACCCAAGCTCTAGTAAATCATTTAGCAAGTGCGGATTTACTACAAAGAACTCA 912 Query 62349 CCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTT 62408 ||||| | ||| || ||| ||||| || ||| | || || | |||||| || Sbjct 911 CCAGATAGTACCCTACGATGATAAATGTTCGAGGTGAATGGCTCAAAACTCTCATTGTTA 852 Query 62409 CCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGA 62468 || |||||||| | ||| ||||| || ||||| || | | ||||| | ||| | || | Sbjct 851 CCTAAAATTTGTGAAGTGGATGCTGTTGGCATTGGAGATATCAATAGAGAATTACGAATA 792 Query 62469 CCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGA---CGGTACA 62525 || ||| | || ||||||| || | ||||||| ||||| | || ||| | Sbjct 791 CCATATTTGGAAATCCTATCTTTAAGCGAATCCCAATCACAAAGTCCAGAGTCTGGTGTA 732 Query 62526 ACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCG 62585 || ||||| |||||| ||||| || ||| || |||||| ||| Sbjct 731 ACTCCCCACATATCAAATTGTAAAATACCCTTACTCGCAGGCGAACCGGAATATGTTTCG 672 Query 62586 TATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTT 62645 ||||| || | || || || || ||||| || || || | || | ||||| || | Sbjct 671 TATGGACCATATTTTTCTGCAAGCTCACAGCTAGCATCGAGAGCTGCATAATAGATAACT 612 Query 62646 TCGAAGATCTTCTTATTTAGATCTTGTGCTTC--CAGGCTATCAAATGG-ATAATTTAAG 62702 || ||||| | ||||||| | | ||| | ||| | || |||| ||| ||| Sbjct 611 TCAAAGATTTGTTTATTTAACTTCTTAGCTCCCTCAGAC--TCGTATGGCATA--CGAAG 556 Query 62703 -AGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATT 62761 | || || ||| || | ||||||| ||||| || | || | |||||| ||| Sbjct 555 CATCATGAAACAGTCTGCGAGCCCTTGAATGCCAATCCCCAATGGACGATGTCTTAAATT 496 Query 62762 AGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCT 62821 ||| ||| | |||| || || |||||| || || || | |||||| | ||| || Sbjct 495 CGAGTTTTTACATTCTTTAAGAGAATAATATCCAACGTCAATCAATTTATTCAAATTCCT 436 Query 62822 GACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTATT----- 62876 ||| || || || || || | || ||||||||| || | |||| Sbjct 435 CGTAATCACCTTCGTAACTTCTTTTAACTTATCAAAATCAAA-CGTCTTGTTATTTTTAT 377 Query 62877 --ACAAACATGTTCAAGG-CAACAGATGCCAGATTACAAACGGCTACCTCAT--TAGCAT 62931 || ||| | | |||| ||| ||| ||||||||||||||||| || || | | || Sbjct 376 CAACGAAC-TTTGGAAGGCCAATAGACGCCAGATTACAAACGGCAACTTCGTCCTTGC-- 320 Query 62932 CCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTT 62991 | |||| ||| || || ||||| | ||||| | |||||||| ||||||| | Sbjct 319 TAGTGTATTCTATGATTTCTGTGCATAAGTTACTTGAAACAATAGTTCCCAAATTTTTCT 260 Query 62992 GATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCT 63051 | ||||| || | || ||||| |||||| ||| ||||| || || || ||||| | Sbjct 259 GGTTACTTTTGCTATTTGCAGCATCTTTATAACAAATAAATGGTGTCCCCGTCTCAATTT 200 Query 63052 GAG 63054 ||| Sbjct 199 GAG 197 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622940145122960