Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001483535.1_202015-12- 30] 906 sequences; 8,691,536 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq382 235 7e-57 seq276 197 2e-45 >seq382 Length=3575 Score = 235 bits (260), Expect = 7e-57 Identities = 587/876 (67%), Gaps = 33/876 (4%) Strand=Plus/Plus Query 32345 GTCTTCTTGA--GAC-ATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAA 32401 ||| |||||| ||| |||||||| |||| |||||||| || | |||||||| || Sbjct 1599 GTCATCTTGATTGACCATAACTCCAGCCATTTGATATTCACCAACTCTCTTTTCGAAGAA 1658 Query 32402 ATTAGTTTTACCTTCTAATGATATATTTTCCATGAAATCGAATGGATTGGTAACATTATA 32461 ||||||||||||| | ||| ||| ||||| |||| || ||||| | ||| || || Sbjct 1659 GTTAGTTTTACCTTGAAGTGAAATAAGGTCCATCCAATCAAAAGGATTAGAAACGTTGTA 1718 Query 32462 AAtttttttAAATCCCAATTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTT 32521 |||||| || |||| || ||| |||||||| || |||||||| |||||| Sbjct 1719 GATTTTTGGAATATCCAAGGCAAAAAGTAATCTATCAGCAACAAATTCAATATATTGGGC 1778 Query 32522 CATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTG 32581 ||| | | | ||||| || ||||| | ||| ||||||| || |||||| | | Sbjct 1779 CATAAGTCTTGAGTTCATACCAATAAGATCAACAGGAAGAGAGTCACAAAGAAAGTTTCT 1838 Query 32582 TTCAATAGAGACCGCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGGTGG----AT 32637 ||||| || || |||| ||| || || || | || | | ||| | Sbjct 1839 TTCAACTTCAACAGCTTCTGATATGAT-----TTGTTG-TACTCTAGGAGCTGGTAATTT 1892 Query 32638 ACAATAAATG--TTTAAACATCAAACATGCGAAATC-GCAGTGTAGACCCTCGTCTCTAC 32694 | | | || | |||| | || ||||| || || || ||| || ||||| || || | || Sbjct 1893 AAATTTAAGGGCTTTATATATTAAACAAGCAAAGTCAGCA-TGGAGACCTTCATCACGAC 1951 Query 32695 TAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATA 32754 |||| | ||| || ||||| |||||||| ||||| || ||||| |||||||||||||| | Sbjct 1952 TAATAAGTTCATTAGAAAATGTGAGTCCAGGCATAAGTCCACGTTTTTTAAGCCAAAAAA 2011 Query 32755 TGGACGCAAATGAT-CCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTC 32813 | | | |||| | | |||||||| | ||||||||| || || || |||||| ||| Sbjct 2012 TTG-CACAAAAGCTACCAGAAAATAGAATTCCTTCAACAGCACAGAATCCAATAATTCTT 2070 Query 32814 TCTCCATAACCGGCGCTGTC---ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTT 32870 || || || | | || || ||||| || ||||| || || |||||||| Sbjct 2071 TCAGCAAAA---GATCGTTCAGAATTCATCCATTTAGTTGCCCATTCTGCTTTCTTTTTA 2127 Query 32871 ACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACA 32930 ||| || || || | |||||| | ||| ||| |||| ||| | Sbjct 2128 ACAGCTTCAATATGAGAAATTGCTTCAAAGAGCATTTGACGTTCTTTAATATCAGTAATA 2187 Query 32931 TATGTATCAATCA--AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAA 32988 ||| ||||||| | || || ||| |||| ||| || | |||||| | |||||||| Sbjct 2188 TATCTATCAATAAGTAATGA--ATAAGTTTCACTATGTATTTGTTCAATAGACATTTGAA 2245 Query 32989 ATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAAT 33048 | | || | ||| || || | || |||| |||| || || | ||||||| | Sbjct 2246 AAGCATAATACATTCTGGCTTCTGGTATTTGTATTTCTCTAAGGAAATTTACTGCTAAGT 2305 Query 33049 TTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATT 33108 |||| | || || || ||||| || ||||| || || || || | ||| ||||||| | Sbjct 2306 TTTCCATAACAATGCCATCACTTGCAGCAAAGAATGCTAAGACGTATTTGATAAAATGTC 2365 Query 33109 TTTCGTCTGGTGTT--AGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTC 33166 |||| ||| || || | | |||||| | |||||| | || ||| | ||||| Sbjct 2366 TTTC--AGGGTCTTTAAGACTTTCCCAATCTCTAGTATCTTGACTTAGATCAATCTCTTC 2423 Query 33167 CACTGTCCAAAATGATGCCTCTGCCTTTTTATACAT 33202 |||||||||||| || || ||||||||||| Sbjct 2424 AGTAACCCAAAATGATGCTTCAGCTTTTTTATACAT 2459 >seq276 Length=6140 Score = 197 bits (218), Expect = 2e-45 Identities = 703/1083 (65%), Gaps = 32/1083 (3%) Strand=Plus/Minus Query 61849 TGTGAATTGAATGGGAGCGGAT-GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTA 61907 ||| ||||| ||||| ||| | ||| || || | | ||| || || || ||||||| Sbjct 1269 TGTAAATTGTATGGG-GCGTGTCGCGCTTTGGGTCCTCAAATAATAAATGCCTGTTTTTA 1211 Query 61908 GACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTA 61967 |||| |||| || |||||||||||| | || || | | | | | || | | | Sbjct 1210 GACCTTTTTTCCAACCATAAAAATGCATAGATGATAACTTTGCAAAGTTAGCATTTTCCA 1151 Query 61968 TATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTA 62027 ||||||| |||| |||||| |||| | | | ||||| ||||||||||| | | Sbjct 1150 TATGGATGTTCAAAGATTGCGATTGACAAACATATGGACCCCTATCTGCAGCCATATCAA 1091 Query 62028 TAATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAA-CTCGCTTAATATCTTCTGGA 62086 | | |||||||| |||||||| | ||| ||||||| ||| | | ||||| || ||| Sbjct 1090 TTACTGTCTTTTGCTTGATTTCCCATACAGTCTTATAAAGCTCACGT-ATATCCTCCGGA 1032 Query 62087 A-GGT--TTGTATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCA 62143 | || | |||| ||||| ||| || ||| ||||| | | || | | |||| Sbjct 1031 ATTGTAAGTATATTTTGAATACTGCCATTATTTGCAATAATATTCTGTTTAAGCCTATCA 972 Query 62144 TTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCT 62203 | |||||| ||| |||| | | || | |||||||| ||||| || || Sbjct 971 TCCCATAACCCAAGCTCTAGTAAATCATTTAGCAAGTGCGGATTTACTACAAAGAACTCA 912 Query 62204 CCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTT 62263 ||||| | ||| || ||| ||||| || ||| | || || | | |||||| || Sbjct 911 CCAGATAGTACCCTACGATGATAAATGTTCGAGGTGAATGGCTCAAAACTCTCATTGTTA 852 Query 62264 CCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGA 62323 || |||||||| | ||| ||||| || ||||| || | | ||||| | ||| | || | Sbjct 851 CCTAAAATTTGTGAAGTGGATGCTGTTGGCATTGGAGATATCAATAGAGAATTACGAATA 792 Query 62324 CCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGA---CGGTACA 62380 || ||| | || ||||||| || | ||||||| ||||| | || ||| | Sbjct 791 CCATATTTGGAAATCCTATCTTTAAGCGAATCCCAATCACAAAGTCCAGAGTCTGGTGTA 732 Query 62381 ACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCG 62440 || ||||| |||||| ||||| || ||| || |||||| ||| Sbjct 731 ACTCCCCACATATCAAATTGTAAAATACCCTTACTCGCAGGCGAACCGGAATATGTTTCG 672 Query 62441 TATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTT 62500 ||||| || | || || || || ||||| || || || | || | ||||| || | Sbjct 671 TATGGACCATATTTTTCTGCAAGCTCACAGCTAGCATCGAGAGCTGCATAATAGATAACT 612 Query 62501 TCGAAGATCTTCTTATTT-AGATCTT-GCGCTTCCAGGCTATCAAATGG-ATAATTTAAG 62557 || ||||| | |||||| | |||| || | ||| | || |||| ||| ||| Sbjct 611 TCAAAGATTTGTTTATTTAACTTCTTAGCTCCCTCAGAC--TCGTATGGCATA--CGAAG 556 Query 62558 -AGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATT 62616 | || || |||||| | ||||||| ||||| || | || | |||||| ||| Sbjct 555 CATCATGAAACAGTCTGCGAGCCCTTGAATGCCAATCCCCAATGGACGATGTCTTAAATT 496 Query 62617 AGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCT 62676 ||| ||| | |||| || || |||||| || || || | |||||| | ||| || Sbjct 495 CGAGTTTTTACATTCTTTAAGAGAATAATATCCAACGTCAATCAATTTATTCAAATTCCT 436 Query 62677 GACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTATT----- 62731 ||| || || || || || | || ||||||||| || | |||| Sbjct 435 CGTAATCACCTTCGTAACTTCTTTTAACTTATCAAAATCAAA-CGTCTTGTTATTTTTAT 377 Query 62732 --ACAAACATGTTCAATG-CAACAGATGCCAGATTACAAACGGCTACCTCAT--TAGCAT 62786 || ||| | | || | ||| ||| ||||||||||||||||| || || | | || Sbjct 376 CAACGAAC-TTTGGAAGGCCAATAGACGCCAGATTACAAACGGCAACTTCGTCCTTGC-- 320 Query 62787 CCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTT 62846 | |||| ||| || || ||||| | ||||| | || ||||| ||||||| | Sbjct 319 TAGTGTATTCTATGATTTCTGTGCATAAGTTACTTGAAACAATAGTTCCCAAATTTTTCT 260 Query 62847 GATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCT 62906 | ||||| || | || ||||| |||||| ||| ||||| || || || ||||| | Sbjct 259 GGTTACTTTTGCTATTTGCAGCATCTTTATAACAAATAAATGGTGTCCCCGTCTCAATTT 200 Query 62907 GAG 62909 ||| Sbjct 199 GAG 197 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633624824117600