Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001483535.1_202015-12- 30] 906 sequences; 8,691,536 total letters Query= NC_012740.1 Length=166418 Score E Sequences producing significant alignments: (Bits) Value seq228 84.2 2e-11 >seq228 Length=8346 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/153 (73%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 50612 CATTGTTGCTTTCTTGCCACAATGACAAATACCCTTCATTTCGACCAGTTTATCAGCAAA 50671 ||| || ||||| |||||||| |||||||| || ||||| ||||||||||| | Sbjct 5951 CATGGTAGCTTTTTTGCCACAGCGACAAATAGTTTTGATTTCAGTAAGTTTATCAGCCCA 6010 Query 50672 TGCCATTAATGCCGCAGATCCTTCAAATAGATTGCCCTGAAAGTCAGTGCGAAGGCCATA 50731 ||| | ||| | ||||||||||| ||| ||| |||||| || | | ||||| Sbjct 6011 TGCTAATAAGTATTTACTTCCTTCAAATAAATTTCCCCTAAAGTCTGTTCTCAAACCATA 6070 Query 50732 GCACAGTACAGGGATAT-TAGCATCATCAACAA 50763 ||| ||||| || |||| |||| | |||||||| Sbjct 6071 GCATAGTACTGGAATATCTAGC-TTATCAACAA 6102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 532403570461280