Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001483535.1_202015-12- 30] 906 sequences; 8,691,536 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq276 125 9e-24 >seq276 Length=6140 Score = 125 bits (138), Expect = 9e-24 Identities = 463/711 (65%), Gaps = 27/711 (4%) Strand=Plus/Plus Query 112294 AGTCTCAAACCGAGACTGGTACACCATATATGCTTTACAAAGACGCCTGTAACCAA-AAG 112352 || |||||| ||||| || ||||||| ||| ||| ||||| || || || | || Sbjct 194 AGGCTCAAATTGAGACGGGGACACCATTTATTTGTTATAAAGATGC-TGCAAATAGCAAA 252 Query 112353 AGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAA----CCTCTGTACAGAAATCTT 112408 ||||| || || |||||||| | | | ||| ||| | | || ||||||||| | Sbjct 253 AGTAACCAGAAAAATTTGGG----AACTATTGTTTCAAGTAACTTATGCACAGAAATCAT 308 Query 112409 GGAATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAA 112468 |||| || ||| || || || || ||||| || || || || | || || || Sbjct 309 AGAATACACTAGCAAGGACGAAGTTGCCGTTTGTAATCTGGCGTCTATTGGCCTTCCAAA 368 Query 112469 GTATGTGGATCCAGAGACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAAC 112528 || || ||| | | | ||||| ||||||| ||| || | | ||||||||||| Sbjct 369 GTTCGTTGATAAAAATAACAAGACGTTTGATTTTGATAAGTTAAAAGAAGTTACGAAGGT 428 Query 112529 TGTCACAAAAAACCTAAACAGAGTTATTGA---TAGAAATTTTTACCCCGTTGAGACTGC 112585 | || | || | || | | | ||||| | || ||| || | | | ||| || Sbjct 429 GATTACGAGGAATTTGAATAAATTGATTGACGTTGGATATTATT--CTCTTAAAGAATG- 485 Query 112586 TCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGA-TG 112644 | || || ||| | ||||| |||||| | || | || | ||||| ||||| || || Sbjct 486 TAAAAACTCGAATTTAAGACATCGTCCATTGGGGATTGGCATTCAAGGGCTCGCAGACTG 545 Query 112645 TATTCATTCTTTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGTA 112704 | ||||| | ||| ||| || || || | ||| ||| | | ||| | | Sbjct 546 T-TTCATGATGCTTCGTATGCCATACGAGTCTGAGGGAGCTAAGAAGTTAAATAAACAAA 604 Query 112705 TATTTGAGACAATGTATCACGCCGCTCTTGAGGCGAGTTCGGAGTTGGCAGAGGTTGATG 112764 | ||||| || ||| | || ||||| || || || | ||| | ||||| ||| Sbjct 605 TCTTTGAAGTTATCTATTATGCAGCTCTCGATGCTAGCTGTGAGCTTGCAGAAAAATATG 664 Query 112765 GTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTT--CAATTTGATAT 112822 ||||||| ||||| | | ||||| || || | | |||| || ||||||||||| Sbjct 665 GTCCATACGAAACATATTCCGGTTCGCCTGCG--AGTAAGGGTATTTTACAATTTGATAT 722 Query 112823 GTGGGAAGGTGAGACCAAGCTTC--ACTACG--ACTGGGACGCTCTCAAGGAACGCATCA 112878 ||||| || | | |||| || ||| | | ||||| | || || || | || Sbjct 723 GTGGGGAGTT-ACACCAGACTCTGGACTTTGTGATTGGGATTCGCTTAAAGATAGGATTT 781 Query 112879 AGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCAC 112938 | | ||| ||||||| ||| ||||| | |||||||||||||| ||||| ||| Sbjct 782 CCAAATATGGTATTCGTAATTCTCTATTGATATCTCCAATGCCAACAGCATCCACTTCAC 841 Query 112939 AAATCTTGGGTAATAATGAATGCTTTGAACCCTACACGACGAACATCTATC 112989 |||| || ||||| ||||| | ||||| || | ||| ||||||| |||| Sbjct 842 AAATTTTAGGTAACAATGAGAGTTTTGAGCCATTCACCTCGAACATTTATC 892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620735370092320