Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001483535.1_202015-12- 30] 906 sequences; 8,691,536 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq276 138 1e-27 >seq276 Length=6140 Score = 138 bits (152), Expect = 1e-27 Identities = 459/699 (66%), Gaps = 25/699 (4%) Strand=Plus/Minus Query 105933 GATAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGG 105992 |||| ||||||| ||| | || ||||| | ||||| ||||| || ||||||| |||| Sbjct 892 GATAAATGTTCGAGGTGAATGGCTCAAAACTCTCATTGTTACCTAAAATTTGTGAAGTGG 833 Query 105993 AGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTT 106052 | |||||||||||||| | ||||| ||| ||||||| ||| | || || | | Sbjct 832 ATGCTGTTGGCATTGGAGATATCAATAGAGAATTACGAATACCATATTTGGAAATCCTAT 773 Query 106053 CCTTGAGAACATCCCAGT--CGTAGT--TGAGCTTGGTTTCACCTTCCCACATATCAAAT 106108 | || || |||||| | | ||| ||| |||| | | || |||||||||||||| Sbjct 772 CTTTAAGCGAATCCCAATCACAAAGTCCAGAGTCTGGTGT-AACTCCCCACATATCAAAT 714 Query 106109 TGAAGCACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCA 106168 || | | || | || || ||||| | |||| || || | ||| | ||| Sbjct 713 TGTAAAATACCCTTACTCGCAGGCGAACCGGAATATGTTTCGTATGGACCATATTTTTCT 654 Query 106169 GCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTC 106228 || | |||||||| || || || | ||| | ||| || ||||||||| | ||| Sbjct 653 GCAAGCTCACAGCTAGCATCGAGAGCTGCATAATAGATAACTTCAAAGATTTGTTTATTT 594 Query 106229 ATCTCCTTGGCTTCATCTGAATCAAAT-GCGTAGCGGCACAAAATAAATACA-TCCGCGA 106286 | || ||| ||| | || || || || || || || || || || ||| || |||| Sbjct 593 AACTTCTTAGCTCCCTCAGACTCGTATGGCATA-CGAAGCATCATGAA-ACAGTCTGCGA 536 Query 106287 GACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAA 106346 | ||||||| || | || | || | |||| | ||| || ||| || ||| | Sbjct 535 GCCCTTGAATGCCAATCCCCAATGGACGATGTCTTAAATTCGAGTTT-TTACATTCTTTA 477 Query 106347 CGGGATAAAAATTTC---TGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGA 106403 || || ||| || |||||| | | || | ||| | |||| | ||| || | Sbjct 476 --AGAGAATAATATCCAACGTCAATCAATTTATTCAAATTCCTCGTAATCACCTTCGTAA 419 Query 106404 TTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGG 106463 ||| | | || ||| ||||||| || | | || || || ||||||||||| Sbjct 418 CTTCTTTTAACTTATCAAAATCAAACGTCTTGTTATTTTTATCAACGAACTTTGGAAGGC 359 Query 106464 CGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTG 106523 | || || |||| ||| ||||| || || ||||| ||||| |||| ||||||| Sbjct 358 CAATAGACGCCAGATTACAAACGGCAACTTCGTCCTTGCTAGTGTATTCTATGATTTCTG 299 Query 106524 TACACAAG----TTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTT-TTTGTT 106578 | || ||| ||| ||| ||| || |||||||| || |||||||| || | || Sbjct 298 TGCATAAGTTACTTGAAAC----AATAGTTCCCAAATTTTTCTGGTTACTTTTGCTATTT 243 Query 106579 GCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTC 106617 ||| ||||| || || || | || ||||||||||| Sbjct 242 GCA-GCATCTTTATAACAAATAAATGGTGTCCCCGTCTC 205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589974118467440