Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001483535.1_202015-12- 30] 906 sequences; 8,691,536 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq32 170 4e-37 seq510 161 2e-34 >seq32 Length=52757 Score = 170 bits (188), Expect = 4e-37 Identities = 171/222 (77%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| |||||||| || | ||| | |||||||||||||||||| |||||||| | ||||| Sbjct 14233 TCTAAGTCTCAAGACTAAGTGTAAAGTGGACTCTTTTTGAATGTTGTAATCAGAGAGAGT 14174 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| ||||| || | || || ||||| ||||| | |||||||| || || || || || Sbjct 14173 TCTACCATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGGGATTCC 14114 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||| || || ||||| ||| ||| || |||||||| || || ||| ||| ||||| | Sbjct 14113 TTCCTTATCCTGAATCTTTGCCTTAACATTCTCAATTGTATCTGAAGGTTCAACTTCCAA 14054 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || | ||||||||||||||||| || ||||| | ||||| Sbjct 14053 AGTGATAGTCTTTCCTGTCAAAGTCTTAACGAAAATCTGCAT 14012 Score = 167 bits (184), Expect = 5e-36 Identities = 170/222 (77%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| |||||||| || | ||| | |||||||||||||||||| |||||||| | ||||| Sbjct 13777 TCTAAGTCTCAAGACTAAGTGTAAAGTGGACTCTTTTTGAATGTTGTAATCAGAGAGAGT 13718 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| ||||| || | || || ||||| ||||| | |||||||| || || || || || Sbjct 13717 TCTACCATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGGGATTCC 13658 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||| || || ||||| ||| ||| || |||||||| || || ||| ||| ||||| | Sbjct 13657 TTCCTTATCCTGAATCTTTGCCTTAACATTCTCAATTGTATCTGAAGGTTCAACTTCCAA 13598 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || | ||||||||||||||||| || || || | ||||| Sbjct 13597 AGTGATAGTCTTTCCTGTCAAAGTCTTAACAAAAATCTGCAT 13556 Score = 152 bits (168), Expect = 1e-31 Identities = 167/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||| ||||| || | || | ||| |||||||||||||| ||||| || | ||||| Sbjct 14005 TCTGAGCCTCAATACTAAATGTAAAGTAGACTCTTTTTGAATGTTGTAGTCAGAGAGAGT 13946 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| ||||| || | || || ||||| ||||| | |||||||| || || || || || Sbjct 13945 TCTACCATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGGGATTCC 13886 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 || || |||||||| ||| ||| || |||||||| || || ||| ||| ||||| | Sbjct 13885 CTCCTTATCTTGAATCTTTGCCTTAACATTCTCAATTGTATCTGAAGGTTCAACTTCCAA 13826 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || | ||||||||||||||||| || || || | ||||| Sbjct 13825 AGTGATAGTCTTTCCTGTCAAAGTCTTGACAAAAATCTGCAT 13784 >seq510 Length=2011 Score = 161 bits (178), Expect = 2e-34 Identities = 169/222 (76%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| |||||||| || | || | ||||||||| || || |||||||| || | ||||| Sbjct 1389 TCTAAGTCTCAATACTAAATGCAAAGTGGACTCCTTCTGGATATTGTAGTCAGATAGAGT 1448 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| |||||||| | ||||| || || ||||| || || ||||| || ||||||||||| Sbjct 1449 TCTACCATCTTCCAATTGCTTTCCAGCAAAGATCAGACGCTGTTGATCAGGAGGAATGCC 1508 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 || || || || || ||| ||| || |||||||| || || ||| ||| ||||| | Sbjct 1509 CTCCTTATCCTGGATCTTTGCCTTTACATTCTCAATAGTATCGGAAGGTTCAACTTCCAA 1568 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || | ||||||||||| |||||||| || || | |||||| Sbjct 1569 TGTGATGGTCTTTCCTGTTAAAGTTTTGACAAAAATTTGCAT 1610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109468720998902