Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001483535.1_202015-12- 30] 906 sequences; 8,691,536 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq382 228 9e-55 seq604 226 3e-54 >seq382 Length=3575 Score = 228 bits (252), Expect = 9e-55 Identities = 584/871 (67%), Gaps = 51/871 (6%) Strand=Plus/Plus Query 18671 TTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATT 18730 |||||||||| ||||||| ||||| ||||| |||||||| || | | ||| ||| | Sbjct 1628 TTTGATATTCACCAACTCTCTTTTCGAAGAAGTTAGTTTTACCTTGAAGTGAAATAAGGT 1687 Query 18731 CCATAAAATCAAATGGATTTTTTACATTATATAtttttttGA-ATCCTAATTCTAATAGT 18789 |||| ||||||| ||||| || || || |||||| | |||| || | || ||| Sbjct 1688 CCATCCAATCAAAAGGATTAGAAACGTTGTAGATTTTTGGAATATCC-AAGGCAAAAAGT 1746 Query 18790 AGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAAT 18849 | |||||| || ||||||| ||||||| | ||| | | ||||| || || | Sbjct 1747 AATCTATCAGCAACAAATTCAATATATTGGGCCATAAGTCTTGAGTTCATACCAATAAGA 1806 Query 18850 TTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAATA 18909 | |||||| || | || |||||| | | ||| | | || || |||||||| || Sbjct 1807 TCAACAGGAAGAGAGTCACAAAGAAAGTTTCTTTCAACTTCAACAGCTTCTGATATGATT 1866 Query 18910 GATACAACTCTATCTTCATTAGGAGGGTATAG--AAGATGTTTAAACATCAAACATGCAA 18967 | |||||| | | | | || | ||| |||| | || ||||| |||| Sbjct 1867 TGTTGTACTCTAGGAGC--TGGTAATTTAAATTTAAGGGCTTTATATATTAAACAAGCAA 1924 Query 18968 AATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCA 19027 | ||| ||| || || || || | ||| || | ||||||||||||||| | ||||||| Sbjct 1925 AGTCAGCATGGAGACCTTCATCACGACTAATAAGTTCATTAGAAAATGTGAGTCCAGGCA 1984 Query 19028 TCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGAT-CCAGAAAAGAATATACCT 19086 | ||||| | |||||| | ||| || || | | |||| | | |||||||| | || ||| Sbjct 1985 TAAGTCCACGTTTTTTAAGCCAAAAAATTGCA-CAAAAGCTACCAGAAAATAGAATTCCT 2043 Query 19087 TCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATT-ATTATGAATCCA 19145 || || || || ||| | |||||| || || ||| || | || ||||| Sbjct 2044 TCAACAGCACAGAATCCAATAATTCTTTCAGCAAAAG----ATCGTTCAGAATTCATCCA 2099 Query 19146 TTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAG 19205 ||| |||||| || || |||||||| ||| | || ||| | |||| | Sbjct 2100 TTTAGTTGCCCATTCTGCTTTCTTTTTAACAGCT---------TCAATATGAG-AAATTG 2149 Query 19206 ATACATACGCTCATCTGTA--TCTTTAACAT-----ATGCATCTATCAATAA--ACTGTA 19256 | || | | ||| || ||||||| || || |||||||||||| | || | Sbjct 2150 CTTCAAA-GAGCATTTGACGTTCTTTAATATCAGTAATATATCTATCAATAAGTAATGAA 2208 Query 19257 CA--TTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCT 19314 | |||| ||| || | ||| |||| ||| ||||| | ||| | ||| |||||| Sbjct 2209 TAAGTTTCACTATGTATTTGTTCAATAGACATTTGAAAAGCATAATACATTCTGGCTTCT 2268 Query 19315 GTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTA 19374 | ||| |||| ||| ||| || || | | || ||||| |||| || |||||||| Sbjct 2269 GGTATTTGTATTTCTCTAAGGAAATTTACTGCTAAGTTTTCCATAACAATGCCATCACTT 2328 Query 19375 GCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCA---TCTGAGGTTAATGTA 19431 || ||||| |||||||| || | ||| ||||||||| ||||| ||| |||| Sbjct 2329 GCAGCAAAGAATGCTAAGACGTATTTGATAAAATGTCTTTCAGGGTCT----TTAAGACT 2384 Query 19432 TTCC-AATCATTAATATCTT----TAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAG 19486 |||| |||| || |||||| ||||| ||||| |||| ||| |||||| || | Sbjct 2385 TTCCCAATCTCTAGTATCTTGACTTAGATCAATCT-CTTCAGTAAC---CCAAAATGATG 2440 Query 19487 CCTCTGCTTTTTTATACATGTTCCATATATC 19517 | || |||||||||||||| ||| ||||| Sbjct 2441 CTTCAGCTTTTTTATACATTGACCAAATATC 2471 >seq604 Length=1308 Score = 226 bits (250), Expect = 3e-54 Identities = 429/624 (69%), Gaps = 8/624 (1%) Strand=Plus/Minus Query 48264 TCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGT 48323 ||||| || ||| |||| | ||| ||||| ||| || | | |||| | ||||||||| Sbjct 1283 TCTTCCTTTCCATGATTCTTCCTAATTTCAATAAACTCTACAACATCAACGTGCCATGGT 1224 Query 48324 TCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCA 48383 || ||||| ||||| || ||||| || || || |||||||| ||||| || ||| Sbjct 1223 TCCAAATAAATTGCAATGGCACCTTTACGCTTCCCTCCACCTTGATCAATATACCTAGCA 1164 Query 48384 GTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAA 48443 || | |||||||| | | ||| || | | ||||| ||| | ||||| ||||| | Sbjct 1163 GTGTCATTATAAACGCGCAGCATCGGAATTAATCCATTAGATCTCCCATTTGTTCCTCGA 1104 Query 48444 ATATAACTTCCACTAGCTCTTATATTACTAATTGAAATACCTATACCACCTGCCATTTTA 48503 ||||| ||| | |||| |||||||| | || | || | |||||||| | ||| Sbjct 1103 ATATATGAACCAGTTCCTCTAATATTACTTACTGCCACCCCAAGGCCACCTGCAGTCTTA 1044 Query 48504 G--ATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCA 48561 || || | ||| ||| || || ||| | || || | ||| ||| ||| | Sbjct 1043 CTAATGTTTGCGCATTTAGTT--AGTGTGTCAAAGATACCGTTTATTGAATCTTCTGGAA 986 Query 48562 TATTTAATAGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTG 48621 | | | || ||||||| |||||||| || | || ||||||||||| | ||| | Sbjct 985 TCCTGAGTAAAAAACAAGATGACATTTGAGGTCGCGGCGTGCCTGAATTAAAGAGTGTGG 926 Query 48622 GAGATGCATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTA 48681 | | ||||||| |||| |||| | |||||||| | ||||||||||| ||| || | Sbjct 925 GTGTTGCATGAGTAAAATATTTTTGCGATAACAACTCATATGTTTCAAGTGCAGCTTCAA 866 Query 48682 TATCCCATTGATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAA 48741 |||| | ||| ||||| ||| || ||||| | | || ||| |||||||| |||| Sbjct 865 TATCACCACAATGAATACCACAAGAAACCCGCATCAGAAGATGTTGTGGTCTTTCCACAA 806 Query 48742 TTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGT 48801 |||||| | ||||| | |||||| ||| |||| | ||||| || ||||||| | | Sbjct 805 CTTTGTTGTCAATTTTAAGAAGATAGGATCTTTCTAGAGTTTTGAAGGCAAAATAATCAT 746 Query 48802 ATGAAAAGTCGTTATCATTAAT-AATTGATGAATTTATTCTTTCCTTATGTTTATATACT 48860 || ||| || || | | ||| |||| |||||| |||||||| ||| ||| || | Sbjct 745 ATTCAAAATC-TTTTGAAAAATCAATTTTTGAATTAATTCTTTCTCTAT-TTTCCATGAT 688 Query 48861 ACATCCAT-TACATTTTTTGATAT 48883 | | ||| |||| |||||| || Sbjct 687 AAAATCATAAACATGTTTTGAAAT 664 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562102434117840