Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001483535.1_202015-12- 30] 906 sequences; 8,691,536 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq604 118 5e-22 seq276 102 4e-17 >seq604 Length=1308 Score = 118 bits (130), Expect = 5e-22 Identities = 257/385 (67%), Gaps = 0/385 (0%) Strand=Plus/Minus Query 25978 TCTCATTTCTTCTTTTCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTG 26037 |||||| ||||| ||||| |||||||| | | || | || || | || ||| ||| Sbjct 1290 TCTCATCTCTTCCTTTCCATGATTCTTCCTAATTTCAATAAACTCTACAACATCAACGTG 1231 Query 26038 CCATGGTTCTAAATAGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTA 26097 ||||||||| ||||| || |||| |||||| | || |||||||||||||| | || Sbjct 1230 CCATGGTTCCAAATAAATTGCAATGGCACCTTTACGCTTCCCTCCACCTTGATCAATATA 1171 Query 26098 TCTTGCAGTTTCATTGAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGT 26157 || ||||| ||||| |||| || ||| |||| ||||||| | || || ||||| Sbjct 1170 CCTAGCAGTGTCATTATAAACGCGCAGCATCGGAATTAATCCATTAGATCTCCCATTTGT 1111 Query 26158 GCTATGAATCTTGGATCCTGTCGATCTAATATCGTGAGCATGAATACCGATTCCACCAGC 26217 | |||| | || || || |||||||| | | || | ||||| || Sbjct 1110 TCCTCGAATATATGAACCAGTTCCTCTAATATTACTTACTGCCACCCCAAGGCCACCTGC 1051 Query 26218 CCATTTTGAAATAGCTGCACAATCTGAAACTGTATCGAAAATTCCTTTTATGCTATCACC 26277 || ||| ||| || | | | ||| || || || || ||||| ||| | Sbjct 1050 AGTCTTACTAATGTTTGCGCATTTAGTTAGTGTGTCAAAGATACCGTTTATTGAATCTTC 991 Query 26278 TTTCATTCCTAATAAAAAACAAGAAGATAATTGCGAATGAGTTGTTCCTGAATTAAATAA 26337 | || | | |||||||||||| || | ||| | | | || ||||||||||| | Sbjct 990 TGGAATCCTGAGTAAAAAACAAGATGACATTTGAGGTCGCGGCGTGCCTGAATTAAAGAG 931 Query 26338 TGTCGGTGTAGCATGAGTATAATAT 26362 ||| ||||| ||||||||| ||||| Sbjct 930 TGTGGGTGTTGCATGAGTAAAATAT 906 >seq276 Length=6140 Score = 102 bits (112), Expect = 4e-17 Identities = 309/468 (66%), Gaps = 26/468 (6%) Strand=Plus/Minus Query 24695 GTTCTAAGATAATACATTCCAGTTTTCAATTTCTTCTTCCAACCGTAAAAATGCATTGAT 24754 || || | |||||| || || ||||| | || |||||||| ||||||||||| ||| Sbjct 1238 GTCCTCAAATAATAAATGCCTGTTTTTAGACCTTTTTTCCAACCATAAAAATGCATAGAT 1179 Query 24755 GTTAGTTTTGCAATGTTTGCTGATTCTAAAAACAAGTTCATCGATTGAGCTTGGCAAACA 24814 | || ||||||| ||| || ||| | | | ||||| ||||| | ||| |||||| Sbjct 1178 GATAACTTTGCAAAGTTAGCATTTTCCATATGGATGTTCAAAGATTGCGATTGACAAACA 1119 Query 24815 AAACGTTGTCTATCTGCAGCTAAGTCAATGATCGT--TTTCATCGATATATCGTAAGCTG 24872 | | ||||||||||| | ||||| | || ||| | ||| | | || | | Sbjct 1118 TATGGACCCCTATCTGCAGCCATATCAATTACTGTCTTTTGCTTGATTTCCCATA--CAG 1061 Query 24873 TTTTGTATCTCTCTTTTATCTCAGTTGGAATACTTGCAATATTTTGAA--CTGATCCATT 24930 | || || ||| ||| || ||||| | |||||||||| ||| ||||| Sbjct 1060 TCTTATAAAGCTCACGTATATCCTCCGGAATTGTAAGTATATTTTGAATACTG--CCATT 1003 Query 24931 TTCTCTCAATAG-ATTC-----AATCTCAT-ATTCGGTGTCCAAAGATTAATTTTTTCAA 24983 | | ||||| |||| || | || || | | || ||| | | | | Sbjct 1002 ATTTG-CAATAATATTCTGTTTAAGCCTATCATCCCATAACCCAAGCTCTAGT------A 950 Query 24984 GATCTCTAATCAAGTGTTTATTTATGATAATAAATTCTCCAGACAAAACTCTTCTTATTG 25043 ||| | | |||||| ||||| | || || || ||||| | || || | || Sbjct 949 AATCATTTAGCAAGTGCGGATTTACTACAAAGAACTCACCAGATAGTACCCTACGA--TG 892 Query 25044 ATAA--GTTTGAAGTGAATGGTTCAAAACATTCATTATTTCCTAAGATTTGAGAAGTAGA 25101 |||| ||| || |||||||| ||||||| ||||| || ||||| ||||| ||||| || Sbjct 891 ATAAATGTTCGAGGTGAATGGCTCAAAACTCTCATTGTTACCTAAAATTTGTGAAGTGGA 832 Query 25102 TGCTGTTGGCATTAATGCTATTAATAGCGAATTTCTCAAACCATATTT 25149 ||||||||||||| | ||| ||||| ||||| | | ||||||||| Sbjct 831 TGCTGTTGGCATTGGAGATATCAATAGAGAATTACGAATACCATATTT 784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253037205963950