Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001483535.1_202015-12- 30] 906 sequences; 8,691,536 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq221 95.1 2e-14 >seq221 Length=9066 Score = 95.1 bits (104), Expect = 2e-14 Identities = 257/388 (66%), Gaps = 24/388 (6%) Strand=Plus/Plus Query 162999 TTAAGGTTGCTCAATTAAGTGGGTATGTTGCGGAACAAACAGACTATAAACACGGTGAA- 163057 |||| ||||| |||||| ||| |||||||| ||||| | | ||| | || || ||| Sbjct 1725 TTAAAGTTGCACAATTAGCTGGTTATGTTGCTGAACATAGTGCTTATCATCATGGAGAAT 1784 Query 163058 CAAAATTT--ATGTGAAACTATAATTAAGTTTGCCCAAGATTTTGTTGGTACAAATAATA 163115 || ||| | || ||||| |||| | || ||| |||||||||| | |||||| Sbjct 1785 CATCATTACAAAGT---ACTATTGTTAATATGGCTCAAAATTTTGTTGGAAGTAATAATC 1841 Query 163116 TAGCATTACTTGAACCTGATGGTCAATTTGGTACCAGATTAGAAGGAGGTAAAGATTC-- 163173 || | | ||||| |||||||||||||| ||| |||||| || |||||| | Sbjct 1842 TAAATCTGTTAGAACCATGTGGTCAATTTGGTAGTAGAAAAGAAGGTGGAAAAGATGCAA 1901 Query 163174 -TGCGGCATCAAGATATATTTATACCAAACCAAATAAAATATTAAAATATATATTTAGAG 163232 ||| || || | ||||| | ||| || | | |||| | |||||| || || Sbjct 1902 GTGCTGC-TC--GTTATATATTTACTAAGCTATCTAAATGGACTAGATATATTTTCCCAG 1958 Query 163233 AAGAAGATGACCCTATTTTAAATTAT---ACTGTTGAGGG---------TGAACCTGTTC 163280 | | ||||| ||| | |||| |||| || ||| || ||||||| | Sbjct 1959 AGGCTGATGATCCTTTATTAACTTATTTATATGATGATGGACAACAAATTGAACCTTTAT 2018 Query 163281 ATTTTATCCCAGTGATTCCATTAATTTTAATTAATGGTTCTATTGGTATTGGAACAGGAT 163340 ||| | | ||| | |||||| | ||||| | |||||| || ||| ||||| ||||| | Sbjct 2019 ATTATGTTCCAATAATTCCAATGATTTTGGTAAATGGTACTGATGGAATTGGTACAGGTT 2078 Query 163341 GGTCATGTTTTATCCCTCAATATAATCC 163368 || ||| | ||| | |||||||| Sbjct 2079 GGAGTAGTTCAGTTCCTAACTATAATCC 2106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635170406613680