Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001483535.1_202015-12- 30] 906 sequences; 8,691,536 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq382 176 1e-38 seq276 104 6e-17 seq41 100 7e-16 >seq382 Length=3575 Score = 176 bits (194), Expect = 1e-38 Identities = 546/825 (66%), Gaps = 25/825 (3%) Strand=Plus/Minus Query 131465 ATGTATAAGAAATCTGTTGCGGCCTTCTGGACTGTTGAAGAGATCGATATGACCAAAGAT 131524 |||||||| ||| ||| || | || ||| | ||||||||| ||| | | ||||| Sbjct 2459 ATGTATAAAAAAGCTGAAGCATCATTTTGGGTTACTGAAGAGATTGATCTAAGTCAAGAT 2400 Query 131525 ATTGATGATTGGGAAAAA-TTAACCTTGAA--TGAAAAAGATTTTGTTTCCAA-AGTTCT 131580 | | |||||||||| |||| || ||||| | ||||| | | || | ||| Sbjct 2399 ACTAGAGATTGGGAAAGTCTTAAA---GACCCTGAAAGACATTTTAT--CAAATACGTCT 2345 Query 131581 T-GCATTCTTCGCCGGAAGTGATGGCATTGTTATTGAAAATCTTGTTATTAATTTCATTC 131639 | |||||||| || | |||||||||||||||||| ||||| | | | |||||| || Sbjct 2344 TAGCATTCTTTGCTGCAAGTGATGGCATTGTTATGGAAAACTTAGCAGTAAATTTCCTTA 2285 Query 131640 AAGAAATTGATATTCCTGAAGTAACATCGTTCTACACATTTCAAGCCGCTGTTGAATCTA 131699 |||||| | || || |||| | | || || | |||||| || ||||| | Sbjct 2284 GAGAAATACAAATACCAGAAGCCAGAATGTATTATGCTTTTCAAATGTCTATTGAACAAA 2225 Query 131700 TTCATAGCGAGATGTATTCATTATTGATTGAGAGTCTTGTTAAAAATGAAGATGATAAAA 131759 | ||||| || | ||||||||| | ||||| || | ||| ||| | | || Sbjct 2224 TACATAGTGAAACTTATTCATTACTTATTGATAGATATATTAC---TGATATTAAAGAAC 2168 Query 131760 AT-AAAT--TATTTGATGCTGTAAATAAATTTCCTGCAATTAAAAAGAAAGCAGAATGGG 131816 | |||| | ||||| || | | | || || ||||||||||||||||||||| Sbjct 2167 GTCAAATGCTCTTTGAAGCAATTTCTCATATTGAAGCTGTTAAAAAGAAAGCAGAATGGG 2108 Query 131817 CTATTAAATGGATTCAAGATGATTCCGCTAATTTTTCTACAAGACTTGTAGCTTTTGCTT 131876 | | ||||||||| | ||| || | |||| || |||| || | | || | Sbjct 2107 CAACTAAATGGATGAATTCTGAA--CGATC-TTTTGCTGAAAGAATTATTGGATTCTGTG 2051 Query 131877 GTGTTGAAGGTATATTCTTTTCAGGT-GCTTTCTGTGCTATCTTTTGGCTTAAGAAGCGT 131935 ||||||||| || | ||||| ||| ||||| ||||| || ||||||||||| || ||| Sbjct 2050 CTGTTGAAGGAATTCTATTTTCTGGTAGCTTT-TGTGCAATTTTTTGGCTTAAAAAACGT 1992 Query 131936 GGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAGAGATGAAGCATTGCAT 131995 ||| | |||||||||||| |||| || ||| || | || | ||||||| | ||| Sbjct 1991 GGACTTATGCCTGGACTCACATTTTCTAATGAACTTATTAGTCGTGATGAAGGTCTCCAT 1932 Query 131996 ACTGAATTTGCTATATTAATCTATAGAAAATTTGCTGATAAACTTGATGAAAATAATATT 132055 |||| |||||| ||||| |||| | || |||| | | || | Sbjct 1931 GCTGACTTTGCTTGTTTAATATATAAAGCCCTTAAATTTAAATTACCAGCTCCTAGAGTA 1872 Query 132056 AAACAACTTATAAGCGAAGCAGTTGATATCGAGAAGGAGTTTATTACAGAAGCTTTGCCT 132115 ||||| | ||| ||||| ||||| | || | | ||| || || || | ||| Sbjct 1871 CAACAAATCATATCAGAAGCTGTTGAAGTTGAAAGAAACTTTCTTTGTGACTCTCTTCCT 1812 Query 132116 TGCAATTTGATTGGGATGAA-TGCTGACTCTATGAAGGAGTACATTGAATTCGTTGCTGA 132174 || | ||||| ||||| | |||| |||| | || |||||||| |||||||| Sbjct 1811 GTTGATCTTATTGGTATGAACTCAAGACT-TATGGCCCAATATATTGAATTTGTTGCTGA 1753 Query 132175 TCGTTTAATTAACCAACTTGGATATTCC-AAGATTTATAACACCCAAAACCCCTATACAT 132233 | | ||| || |||||||||||| || || || ||| || || | | | Sbjct 1752 TAGATTACTT-TTTGCCTTGGATATTCCAAAAATCTACAACGTTTCTAATCCTTTTGATT 1694 Query 132234 GGATGGAGTCAATTTCGCTTGAAGGTAAAACGAACTTCTTCGAAA 132278 ||||||| ||||| ||| |||||||||| ||||||||||||| Sbjct 1693 GGATGGACCTTATTTCACTTCAAGGTAAAACTAACTTCTTCGAAA 1649 >seq276 Length=6140 Score = 104 bits (114), Expect = 6e-17 Identities = 322/491 (66%), Gaps = 23/491 (5%) Strand=Plus/Plus Query 112955 TGATTGGAAAAATCTTAAAGATAGTGTTATGAAACATGGAACTACAAACTCTCTACTGTT 113014 ||||||| | ||||||||||| || ||| |||| | | || |||||| || | Sbjct 753 TGATTGGGATTCGCTTAAAGATAGGATTTCCAAATATGGTATTCGTAATTCTCTATTGAT 812 Query 113015 GGCACCAATGCCTACAGCTTCGACTGCACAGATTCTCGGTAATAATGAATGTTTCGAGCC 113074 | |||||||| ||||| || ||| |||| ||| | ||||| ||||| |||| ||||| Sbjct 813 ATCTCCAATGCCAACAGCATCCACTTCACAAATTTTAGGTAACAATGAGAGTTTTGAGCC 872 Query 113075 AATTACAAGTAATATTTATGTCCGACGTGTTCTAGCAGGTGAGTTTGTACTTTGTAATAA 113134 | | || || |||||| || | || ||| | |||||||| ||||||| ||| Sbjct 873 ATTCACCTCGAACATTTATCATCGTAGGGTACTATCTGGTGAGTT----CTTTGTAGTAA 928 Query 113135 AT----ATCTGCAAGAAGAACTTCTCGGAATCGGTAAATGGAACAATGAAGTGAAAAACT 113190 || | ||| | | || | || | | || |||| | || | ||| | Sbjct 929 ATCCGCACTTGCTAAATGATTTACTAGAGCTTGGGTTATGGGATGATAGGCTTAAACAGA 988 Query 113191 CCATTATTGCTAATCAAGGTTCGGTTCAACAT---CTAAAATTGCCTGA----TTGCGTG 113243 |||||||| ||| | || ||||| || || | | | || || | |||| Sbjct 989 ATATTATTGCAAATAATGGCAGTATTCAAAATATACTTACAATTCCGGAGGATATACGTG 1048 Query 113244 AAAGATGTATTTAAGACTATTTGGGAAATTAAGCAACGTGTCGTAATTGATATGGCTGCA 113303 || | || ||||||| | |||||||| |||||| |||||||||||||||||| Sbjct 1049 --AGCTTTA--TAAGACTGTATGGGAAATCAAGCAAAAGACAGTAATTGATATGGCTGCA 1104 Query 113304 GATCGTGGCAAGTTTATCGATCAATCTCAGTCGATGAACTTATTTATGCCGGACA-CCTC 113362 ||| | || | | | |||||| || || ||||| | |||| | | | || Sbjct 1105 GATAGGGGTCCATATGTTTGTCAATCGCAATCTTTGAACATCCATATG--GAAAATGCTA 1162 Query 113363 AC-CAGATAAGGTGACATCTGCTCTATTTTACGGCTGGAAAAAAGGTTTAAAAACAGGTA 113421 || | ||| | ||||| | ||||| || |||||||||||| |||||||||| | Sbjct 1163 ACTTTGCAAAGTTATCATCTATGCATTTTTATGGTTGGAAAAAAGGTCTAAAAACAGGCA 1222 Query 113422 TGTATTATTTG 113432 | ||||||||| Sbjct 1223 TTTATTATTTG 1233 >seq41 Length=47962 Score = 100 bits (110), Expect = 7e-16 Identities = 329/505 (65%), Gaps = 15/505 (3%) Strand=Plus/Minus Query 304986 TTAAAGGTAAAGAGGGTCGTATTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTG 305045 ||||||||||||| || ||| | |||| ||| | | || ||| | ||||||||||||| Sbjct 31667 TTAAAGGTAAAGAAGGACGTTTCAGAGGAAATTTGAGTGGTAAAAGAGTTGATTTTAGTG 31608 Query 305046 CAAGAAGTGTAATCACACCTGATTCTCAAATTAGTCTTCATGAATTAGGAGTTCCAATTG 305105 ||| | ||| || | ||||| || | ||| || ||||| | | ||| || || Sbjct 31607 GAAGGACTGTTATTTCTCCTGACCCTAATATTGAAGTTGATGAAGTTGTAGTACCTATGA 31548 Query 305106 AAATTGCTTTAAAACTAACATTTCCAGAGAAAGTTAACGAGAAAAATATTAAACATTTGA 305165 ||||| ||| | || | ||| || | |||||| | | |||||| | ||| | Sbjct 31547 TCATTGCAAAGAAATTGACTTATCCCGAAAGAGTTAATGCTATTAATATTGACTCTTTAA 31488 Query 305166 GACGTTGTGTTCTTAATGGAAATAGCAAGTATCCAGGTGCTCGTGCTGTTATAAAACACA 305225 || |||||| |||||| || | | ||||| || | |||| || || | Sbjct 31487 GAGAAGCTGTTCTAAATGGACATGATATTTGGCCAGGAGCATGCTATGTT-TATAAGA-- 31431 Query 305226 AGCAAAAGAAGACAATAT---CTTTGAACCATATCGATTTAAAACAATTCAGTAAAATG- 305281 | || |||| ||| | ||| || ||| || || | || | | | Sbjct 31430 -GTAATGGAAGCAAATCTAGTCTTAGA----TATGCTAATAGAAGAGTTGTATCAGAGCG 31376 Query 305282 -CTTGAAATTAATGATATTGTTATCAGACATTTGAATGACAATGATTGGGTTCTGTTCAA 305340 ||||| ||| |||||||| |||||| |||| ||| || | ||||| Sbjct 31375 TCTTGAGATTGGAGATATTGTAGAAAGACATATGAAAACTGGAGATATCGTCTTATTCAA 31316 Query 305341 TAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTATC-TG 305399 ||| |||||| | |||| | | ||| ||| |||| ||||| ||| | | || Sbjct 31315 TAGACAACCAAGTTTACATAGACTTAGTATTATGTCTCACAAAGTTGTAGTTATGCCATG 31256 Query 305400 GATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTGATGGAG 305459 || || ||| |||| |||| | |||||||| | ||||||||||| ||||| ||||||| Sbjct 31255 GAGA-ACTTTTAGATTCAATGAATGTGCTTGTGCTCCTTATAATGCAGATTTCGATGGAG 31197 Query 305460 ATGAAATGAATATGCATGTACCTCA 305484 ||||||||||| | ||| | ||||| Sbjct 31196 ATGAAATGAATCTTCATCTTCCTCA 31172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186799023328666