Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001483535.1_202015-12- 30] 906 sequences; 8,691,536 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq382 241 2e-58 seq604 176 6e-39 >seq382 Length=3575 Score = 241 bits (266), Expect = 2e-58 Identities = 588/878 (67%), Gaps = 15/878 (2%) Strand=Plus/Plus Query 39302 TCTTCTTG--TGAC-ATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAA 39358 || ||||| |||| |||||||| |||| ||||||||||| | || ||||| || Sbjct 1600 TCATCTTGATTGACCATAACTCCAGCCATTTGATATTCACCAACTCTCTTTTCGAAGAAG 1659 Query 39359 TTAGTTTTGCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTAGTTGCATTATAt 39418 |||||||| |||| | ||| ||| ||||| ||||||| ||||||| | || || Sbjct 1660 TTAGTTTTACCTTGAAGTGAAATAAGGTCCATCCAATCAAAAGGATTAGAAACGTTGTAG 1719 Query 39419 ttttttttAA-ATCCTAATTCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTT 39477 ||||| || |||| || | ||| |||||||| ||||||||||| || ||| Sbjct 1720 ATTTTTGGAATATCC-AAGGCAAAAAGTAATCTATCAGCAACAAATTCAATATATTGGGC 1778 Query 39478 CATCATTTCACAATTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTT 39537 ||| | | | ||||| || || || | ||| || |||| || ||||| | | | Sbjct 1779 CATAAGTCTTGAGTTCATACCAATAAGATCAACAGGAAGAGAGTCACAAAGAAAGTTTCT 1838 Query 39538 TTCGATGTCTACGGCCTCTGTTATTATCGATGTTACTACCTCATCACTCGGTGGATGCAA 39597 ||| | || || || |||| ||| || | |||| || || ||| | || Sbjct 1839 TTCAACTTCAACAGCTTCTGATATGATTTGTTGTACT--CTAGGAGCT-GGTAATTTAAA 1895 Query 39598 TAAATG---TTTAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAAT 39654 | | | |||| | ||||| || || |||||| ||| || || ||||| | |||||| Sbjct 1896 TTTAAGGGCTTTATATATTAAACAAGCAAAGTCAGCATGGAGACCTTCATCACGACTAAT 1955 Query 39655 TAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGC 39714 | ||| ||||||||||||||||||||||| || ||||| ||||| |||||||| || || Sbjct 1956 AAGTTCATTAGAAAATGTGAGTCCAGGCATAAGTCCACGTTTTTTAAGCCAAAAAATTGC 2015 Query 39715 AGCAAAAGAT-CCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTC 39773 | |||||| | |||||||| | || ||||| || || ||| ||| || ||| || Sbjct 2016 A-CAAAAGCTACCAGAAAATAGAATTCCTTCAACAGCACAGAATCCAATAATTCTTTCAG 2074 Query 39774 CGTAACTTGTATCATTATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAG 39833 | || | ||| || ||||| || |||||| || |||||||| || ||| Sbjct 2075 CAAAAGATCGTTCAGAATTCATCCATTTAGTTGCCCATTCTGCTTTCTTTTTAACAGCTT 2134 Query 39834 GCATTGTTTCTATAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTAT 39893 || || || | |||||| || ||| | | |||| ||| |||| ||| Sbjct 2135 CAATATGAGAAATTGCTTCAAAGAGCATTTGACGTTCTTTAATATCAGTAATATATCTAT 2194 Query 39894 CTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAA 39953 | || | | ||| |||| ||| || | |||||| | ||| ||||| | ||| Sbjct 2195 CAATAAGTAATGAATAAGTTTCACTATGTATTTGTTCAATAGACATTTGAAAAGCATAAT 2254 Query 39954 AACATCTTGCTTCAGTAATTTGTACCTCT-GAACAAAATCTTTCCGCCAAATTTTCATTC 40012 | ||| ||||| | ||||||| ||| || |||| || | || || ||||| | Sbjct 2255 ACATTCTGGCTTCTGGTATTTGTATTTCTCTAAGGAAAT-TTACTGCTAAGTTTTCCATA 2313 Query 40013 ACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCG 40072 || || |||||||| || ||||| ||||| || || | ||| ||||||| | ||||| | Sbjct 2314 ACAATGCCATCACTTGCAGCAAAGAATGCTAAGACGTATTTGATAAAATGTCTTTCAGGG 2373 Query 40073 GGTGTCAATTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAA 40132 | | | | | ||| || | |||||| || ||| | ||||||| |||| Sbjct 2374 TCTTTAAGACTTTCCCAATCTCTAGTATCTTGACTTAGATCAATCTCTTCAGTAACCCAA 2433 Query 40133 AACGACGCCTCTGCCTTTTTGTACATGTTCCATATATC 40170 || || || || || ||||| ||||| ||| ||||| Sbjct 2434 AATGATGCTTCAGCTTTTTTATACATTGACCAAATATC 2471 >seq604 Length=1308 Score = 176 bits (194), Expect = 6e-39 Identities = 388/577 (67%), Gaps = 6/577 (1%) Strand=Plus/Minus Query 69633 AAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTC 69692 ||||||||| | ||| | ||||| ||||| ||| || ||| || | |||||| Sbjct 1305 AAAGAGATCGCGACATCTCATCTCTTCCTTTCCATGATTCTTCCTAATTTCAATAAACTC 1246 Query 69693 CATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCC 69752 | || |||| ||||||||||| | ||| || || ||| | || || || ||| Sbjct 1245 TACAACATCAACGTGCCATGGTTCCAAATAAATTGCAATGGCACCTTTACGCTTCCCTCC 1186 Query 69753 TCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATT 69812 || ||||| || || || ||||||| |||||| || | |||||||||||| | ||||| Sbjct 1185 ACCTTGATCAATATACCTAGCAGTGTCATTATAAACGCGCAGCATCGGAATTAATCCATT 1126 Query 69813 AGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAG 69872 |||| | ||||||||||| |||||| || || | | ||||||||| | | | Sbjct 1125 AGATCTCCCATTTGTTCCTCGAATATATGAACCAGTTCCTCTAATATTACTTACTGCCAC 1066 Query 69873 ACCTATTCCTCCTGCCATTTTA--GAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930 || | || ||||| | ||| | || | ||| ||| | ||||||| | ||| Sbjct 1065 CCCAAGGCCACCTGCAGTCTTACTAATGTTTGCGCATTTAGTT--AGTGTGTCAAAGATA 1008 Query 69931 CCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATA 69990 || | ||| ||| ||| || | || | |||||| ||||||||| | | Sbjct 1007 CCGTTTATTGAATCTTCTGGAATCCTGAGTAAAAAACAAGATGACATTTGAGGTCGCGGC 948 Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050 || || | |||||| | ||| || | ||| ||||| || |||||| || | || | Sbjct 947 GTGCCTGAATTAAAGAGTGTGGGTGTTGCATGAGTAAAATATTTTTGCGATAACAACTCA 888 Query 70051 TATGTTTCAATAGCTGATTCTATATC-CCACTGATGAATTCCTATCGCGACACGCATCAA 70109 |||||||||| || | ||| ||||| |||| |||||| || | || ||||||| Sbjct 887 TATGTTTCAAGTGCAGCTTCAATATCACCAC-AATGAATACCACAAGAAACCCGCATCAG 829 Query 70110 CATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAG 70169 | ||| || |||| ||| || ||| || | ||||| | || || ||| |||| || Sbjct 828 AAGATGTTGTGGTCTTTCCACAACTTTGTTGTCAATTTTAAGAAGATAGGATCTTTCTAG 769 Query 70170 AGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTT 70206 |||||| || ||||||| | ||| ||| ||| || Sbjct 768 AGTTTTGAAGGCAAAATAATCATATTCAAAATCTTTT 732 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686901020757840