Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001483535.1_202015-12- 30] 906 sequences; 8,691,536 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq276 134 2e-26 >seq276 Length=6140 Score = 134 bits (148), Expect = 2e-26 Identities = 457/697 (66%), Gaps = 25/697 (4%) Strand=Plus/Minus Query 110708 TAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAG 110767 || ||||| | ||| |||| ||||| | ||||| ||||| || ||||||| ||||| Sbjct 890 TAAATGTTCGAGGTGAATGGCTCAAAACTCTCATTGTTACCTAAAATTTGTGAAGTGGAT 831 Query 110768 GCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCC 110827 |||||||||||||| | ||||| ||| ||||||| ||| | | || | || Sbjct 830 GCTGTTGGCATTGGAGATATCAATAGAGAATTACGAATACCATATTTGGAAATCCTATCT 771 Query 110828 TTGAGAACATCCCAGTCGTA--GTT--GAGCTTGGTTTCACCTTCCCACATGTCAAACTG 110883 || || |||||| || | || ||| |||| | || | ||||||| ||||| || Sbjct 770 TTAAGCGAATCCCAATCACAAAGTCCAGAGTCTGGTGTAAC-TCCCCACATATCAAATTG 712 Query 110884 AAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGC 110943 | | || | ||| || ||||| | | ||||| || | ||| | ||| || Sbjct 711 TAAAATACCCTTACTCGCAGGCGAACCGGAATATGTTTCGTATGGACCATATTTTTCTGC 652 Query 110944 CAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCAT 111003 | |||||||| || || || | ||| | ||| || ||||||||| | ||| | Sbjct 651 AAGCTCACAGCTAGCATCGAGAGCTGCATAATAGATAACTTCAAAGATTTGTTTATTTAA 592 Query 111004 CTCCTTGGCTTCATCTGAATCAAATG-CGTAGCGGCACAAAATAAATACA-TCCGCGAGA 111061 || ||| ||| | || || || ||| | || || || || || ||| || ||||| Sbjct 591 CTTCTTAGCTCCCTCAGACTCGTATGGCATA-CGAAGCATCATGAA-ACAGTCTGCGAGC 534 Query 111062 CCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACG 111121 ||||||| || | || | || | |||| | ||| || ||| || ||| | | Sbjct 533 CCTTGAATGCCAATCCCCAATGGACGATGTCTTAAATTCGAGTTTTTA-CATTCTTTAAG 475 Query 111122 GGATAAAAATTTCT---GTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATT 111178 || | ||| || |||||| | | || | ||| | |||| | ||| || | | Sbjct 474 AGA--ATAATATCCAACGTCAATCAATTTATTCAAATTCCTCGTAATCACCTTCGTAACT 417 Query 111179 TCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCG 111238 || | | || ||| ||||||| || | | || || || ||||||||||| | Sbjct 416 TCTTTTAACTTATCAAAATCAAACGTCTTGTTATTTTTATCAACGAACTTTGGAAGGCCA 357 Query 111239 ATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTA 111298 || || |||| ||| ||||| || || ||||| ||||| |||| |||||||| Sbjct 356 ATAGACGCCAGATTACAAACGGCAACTTCGTCCTTGCTAGTGTATTCTATGATTTCTGTG 297 Query 111299 CATAAG----TTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTT-CTTGTTGC 111353 |||||| ||| ||| ||| || |||||||| || |||||||| || || |||| Sbjct 296 CATAAGTTACTTGAAAC----AATAGTTCCCAAATTTTTCTGGTTACTTTTGCTATTTGC 241 Query 111354 ACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTC 111390 | ||||| || || || | || ||||||||||| Sbjct 240 A-GCATCTTTATAACAAATAAATGGTGTCCCCGTCTC 205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628024887537600