Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001483535.1_202015-12- 30] 906 sequences; 8,691,536 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq32 131 1e-25 seq510 100 2e-16 >seq32 Length=52757 Score = 131 bits (144), Expect = 1e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||||||||| || | || ||||| || |||||| | |||||||| | | Sbjct 14012 ATGCAGATTTTCGTTAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTTGAACCTTCA 14071 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| |||| | ||| ||| || || ||||| | || || ||||| Sbjct 14072 GATACAATTGAGAATGTTAAGGC-AAAGATTCAGGATAAGGAAGGAATCCCACCTGATCA 14130 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| ||||| || ||||| || |||||| | || || | | ||| | |||||||| Sbjct 14131 ACAACGTTTGATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTCTGATTACAA 14190 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 ||| |||||||||||||| ||||| ||||| || || | |||| ||| Sbjct 14191 CATTCAAAAAGAGTCCACTTTACACTTAGTCTTGAGACTTAGAGGCGGA 14239 Score = 127 bits (140), Expect = 1e-24 Identities = 161/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || ||||||||||| ||||| || | || ||||| || |||||| | |||||||| | Sbjct 13553 AATATGCAGATTTTTGTTAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTTGAACCT 13612 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | || || |||| ||| |||| | ||| ||| || || ||||| | || || || Sbjct 13613 TCAGATACAATTGAGAATGTTAAGGC-AAAGATTCAGGATAAGGAAGGAATCCCACCTGA 13671 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 |||||| ||||| || ||||| || |||||| | || || | | ||| | ||||| Sbjct 13672 TCAACAACGTTTGATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTCTGATTA 13731 Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 |||||| |||||||||||||| ||||| ||||| || || Sbjct 13732 CAACATTCAAAAAGAGTCCACTTTACACTTAGTCTTGAG 13770 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || || | || ||||| || |||||| | |||||||| | | Sbjct 13784 ATGCAGATTTTTGTCAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTTGAACCTTCA 13843 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| |||| | ||| ||| || || || || | || || ||||| Sbjct 13844 GATACAATTGAGAATGTTAAGGC-AAAGATTCAAGATAAGGAGGGAATCCCACCTGATCA 13902 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| ||||| || ||||| || |||||| | || || | | ||| | || ||||| Sbjct 13903 ACAACGTTTGATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTCTGACTACAA 13962 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| ||||||||||| || ||||||||||| || ||| | |||| || Sbjct 13963 CATTCAAAAAGAGTCTACTTTACATTTAGTATTGAGGCTCAGAGGTGG 14010 >seq510 Length=2011 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || ||||| ||||| || ||||| | || ||||| || ||||| | |||||||| | Sbjct 1613 AAGATGCAAATTTTTGTCAAAACTTTAACAGGAAAGACCATCACATTGGAAGTTGAACCT 1554 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | || ||| |||| | |||| ||| || || || || || | || || ||| Sbjct 1553 TCCGATACTATTGAGAATGTAAAGGCAAAGATCCAGGATAAGGAGGGCATTCCTCCTGAT 1494 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 ||||||||| | || ||||| || || ||| ||||||| | | ||| || || ||| Sbjct 1493 CAACAGCGTCTGATCTTTGCTGGAAAGCAATTGGAAGATGGTAGAACTCTATCTGACTAC 1434 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 || || || || |||||||| || |||||||| || || Sbjct 1433 AATATCCAGAAGGAGTCCACTTTGCATTTAGTATTGAG 1396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338005867740248