Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001483535.1_202015-12- 30] 906 sequences; 8,691,536 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq382 206 4e-48 seq276 197 2e-45 seq604 156 6e-33 >seq382 Length=3575 Score = 206 bits (228), Expect = 4e-48 Identities = 586/885 (66%), Gaps = 29/885 (3%) Strand=Plus/Plus Query 47826 TCTTCTTGA--GAC-ATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAA 47882 || |||||| ||| |||||||| ||||||||||||| || | || ||||| || Sbjct 1600 TCATCTTGATTGACCATAACTCCAGCCATTTGATATTCACCAACTCTCTTTTCGAAGAAG 1659 Query 47883 TTAGTTTTGCCTTCCAATGATATATTTTCCATAAAATCAAATGGATTAACTGCATTATAA 47942 |||||||| |||| | ||| ||| ||||| ||||||| |||||| | || || Sbjct 1660 TTAGTTTTACCTTGAAGTGAAATAAGGTCCATCCAATCAAAAGGATTAGAAACGTTGTAG 1719 Query 47943 AtttttttAA-ATCCTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATATCTTTT 48001 |||||| || |||| || | ||| | |||||| ||||| ||||| |||||| Sbjct 1720 ATTTTTGGAATATCC-AAGGCAAAAAGTAATCTATCAGCAACAAATTCAATATATTGGGC 1778 Query 48002 CATCATTTCACAATTCATTCCTATAAGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTG 48061 ||| | | | ||||| || ||||| | ||| || |||| || |||||| | | Sbjct 1779 CATAAGTCTTGAGTTCATACCAATAAGATCAACAGGAAGAGAGTCACAAAGAAAGTTTCT 1838 Query 48062 TTCGATAGTGACAGCATCCACTATTATCGATGTTACCGTTTCCTC--ACTTGGTGGATAC 48119 ||| | ||||| || ||| || |||| || || | |||| | Sbjct 1839 TTCAACTTCAACAGCTTCTGATATGATT--TGTT---GTACTCTAGGAGCTGGTAATTTA 1893 Query 48120 AACAAATG---TTTAAACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTA 48176 || | | |||| | |||||||| ||||| ||| ||| ||||||||||| | |||| Sbjct 1894 AATTTAAGGGCTTTATATATTAAACAAGCAAAGTCAGCATGGAGACCTTCATCACGACTA 1953 Query 48177 ATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATT 48236 || | ||| |||||||||||||| || ||||| |||||||||||||| |||||||| ||| Sbjct 1954 ATAAGTTCATTAGAAAATGTGAGTCCAGGCATAAGTCCACGTTTTTTAAGCCAAAAAATT 2013 Query 48237 GCCGCGAAAGAT-CCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTC 48295 | | | |||| | |||||||| | || ||||| || || ||| | ||| ||| || Sbjct 2014 G-CACAAAAGCTACCAGAAAATAGAATTCCTTCAACAGCACAGAATCCAATAATTCTTTC 2072 Query 48296 TCCGTAACTGGCTTCGTTGTGTATCCA-CCGTT---GTGCCCAATCAGCCTTCTTCTTTA 48351 | || ||||| | || || || || |||||| || || ||||| || | Sbjct 2073 AGCAAAA----GATCGTTCAGAATTCATCCATTTAGTTGCCCATTCTGCTTTCTTTTTAA 2128 Query 48352 CACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGT 48411 || || || || | |||||| | | ||| || |||| ||| | Sbjct 2129 CAGCTTCAATATGAGAAATTGCTTCAAAGAGCATTTGACGTTCTTTAATATCAGTAATAT 2188 Query 48412 AAGTATCTATTA--AAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAA 48469 | |||| || | || || ||| |||| || || | |||||| | ||| ||||| Sbjct 2189 ATCTATCAATAAGTAATGA--ATAAGTTTCACTATGTATTTGTTCAATAGACATTTGAAA 2246 Query 48470 TCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATT 48529 | ||| | ||| ||||||| || |||| || || || | | || || || Sbjct 2247 AGCATAATACATTCTGGCTTCTGGTATTTGTATTTCTCTAAGGAAATTTACTGCTAAGTT 2306 Query 48530 CTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTT 48589 || | || || |||||||| |||||||| |||||||| || | ||| ||||||| | | Sbjct 2307 TTCCATAACAATGCCATCACTTGCAGCAAAGAATGCTAAGACGTATTTGATAAAATGTCT 2366 Query 48590 TTCGTTGGAAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGC 48649 ||| | | || | | ||| || | |||||| || ||| | ||||||| Sbjct 2367 TTCAGGGTCTTTAAGACTTTCCCAATCTCTAGTATCTTGACTTAGATCAATCTCTTCAGT 2426 Query 48650 TGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATATATC 48694 |||||||||||| || |||||||||||||| ||| ||||| Sbjct 2427 AACCCAAAATGATGCTTCAGCTTTTTTATACATTGACCAAATATC 2471 >seq276 Length=6140 Score = 197 bits (218), Expect = 2e-45 Identities = 799/1239 (64%), Gaps = 30/1239 (2%) Strand=Plus/Minus Query 76820 ATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCAT-GCTTGTCAGTT 76878 ||| || || || ||||||||||| |||| || || |||||||| | | | | || Sbjct 1230 ATAATAAATGCCTGTTTTTAGACCTTTTTTCCAACCATAAAAATGCATAGATGATAACTT 1171 Query 76879 TGGAATAACTAGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTC 76938 || || | ||| || | ||||| || |||| || || |||| | | | | Sbjct 1170 TGCAA-AGTTAGCATTTTCCATATGGATGTTCAAAGATTGCGATTGACAAACATATGGAC 1112 Query 76939 CTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAA 76998 | ||||| || ||||| | || | |||||||| |||||||| | ||| || ||| Sbjct 1111 CCCTATCTGCAGCCATATCAATTACTGTCTTTTGCTTGATTTCCCATACAGTCTTATAAA 1052 Query 76999 CTTGTTTGATATCATCTGGAA-GGT--TTGTATTTTGAATGGAACCACCATCTGATATAA 77055 | ||||| || |||| || | |||||||||| ||| || || |||| Sbjct 1051 GCTCACGTATATCCTCCGGAATTGTAAGTATATTTTGAATACTGCCATTATTTGCAATAA 992 Query 77056 TTGTATTCTTTATA---TCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGAT 77112 |||||| | || ||||| ||| || |||| |||| | | || | | Sbjct 991 ---TATTCTGTTTAAGCCTATCATCCCATAACCCAAGCTCTAGTAAATCATTTAGCAAGT 935 Query 77113 GAGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTAT 77172 | ||||| |||| || || ||||| | ||| |||||| ||||| || ||| Sbjct 934 GCGGATTTACTACAAAGAACTCACCAGATAGTACCCTACGATGATAAATGTTCGAGGTGA 875 Query 77173 ATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTG 77232 |||| || | | |||||||| || |||||||| | ||| || || |||||||| || | Sbjct 874 ATGGCTCAAAACTCTCATTGTTACCTAAAATTTGTGAAGTGGATGCTGTTGGCATTGGAG 815 Query 77233 CCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAAT 77292 | ||||| | ||| | | ||||| | | || ||||||| || | | ||||| Sbjct 814 ATATCAATAGAGAATTACGAATACCATATTTGGAAATCCTATCTTTAAGCGAATCCCAAT 755 Query 77293 CCCAAAGATCTGA---AGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAG 77349 | ||||| | || ||| ||| |||| | ||| |||||| ||| || ||||| | Sbjct 754 CACAAAGTCCAGAGTCTGGTGTAACTCCCCACATATCAAATTGTAAAATACCCTTACTCG 695 Query 77350 CATATGATCCATTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTT 77409 || || || ||||||||| || || || | | |||| || || ||||| || || | Sbjct 694 CAGGCGAACCGGAATATGTTTCGTATGGACCATATTTTTCTGCAAGCTCACAGCTAGCAT 635 Query 77410 CCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATAC 77469 | | ||| | ||||| || ||| || || | ||||| | | | ||| | | Sbjct 634 CGAGAGCTGCATAATAGATAACTTCAAAGATTTGTTTATTTAACTTCTTAGCTCCCTCAG 575 Query 77470 TATCAAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAA 77529 || | || | | | | || || ||||| | || |||| ||||| || | Sbjct 574 ACTCGTATGGCATACGAAGCATCATGAAACAGTCTGCGAGCCCTTGAATGCCAATCCCCA 515 Query 77530 TAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTA 77589 || | |||||| ||| || ||||| |||| || || |||||| || ||| | Sbjct 514 ATGGACGATGTCTTAAATTCGAGTTTTTACATTCTTTAAGAGAATAATATCCAACGTCAA 455 Query 77590 TAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCAA 77649 | | |||||| | ||| || || || || || || |||| ||| |||||||| Sbjct 454 TCAATTTATTCAAATTCCTCGTAATCACCTTCGTAACTTCTTTTAACTTATCAAAATCAA 395 Query 77650 A--TCTT-CCATCTATAACAA-ACATGTTCAAAG--CTATAGATGCTAGATTACAAACTG 77703 | |||| || | || ||| | || ||| | ||||| || ||||||||||| | Sbjct 394 ACGTCTTGTTATTTTTATCAACGAACTTTGGAAGGCCAATAGACGCCAGATTACAAACGG 335 Query 77704 CTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAG 77763 | || || | | | | |||| ||| || || || |||| ||||| | |||| Sbjct 334 CAACTTCGTCCTTGCTAGTGTATTCTATGATTTCTGTGCATAAGTTACTTGAAACAATAG 275 Query 77764 TGCCCAGATTTTGTTGGTTGCTCTTTTTA-TTGCATGAGTCCTTATAAAGAATAAACGGA 77822 | |||| ||||| ||||| || || || ||||| | || |||||| |||||| || Sbjct 274 TTCCCAAATTTTTCTGGTTACTTTTGCTATTTGCA-GCATCTTTATAACAAATAAATGGT 216 Query 77823 GTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATCATA 77882 ||||| || ||||| || | | | || | ||| | | ||| || || |||| Sbjct 215 GTCCCCGTCTCAATTTGAGCCTGTAAGATTAAGAACCA-AAGTTTCT-GCGCTT-TCATC 159 Query 77883 GATTTGTATC----GCCTCTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCC 77938 | ||| || |||| | | | ||||| | ||||||| | ||| ||||| || Sbjct 158 GTTTTCCTTCCACGGCCT-TGTTTCTCATACTCTTCATATAGCTTCTTAAAATCATCGCC 100 Query 77939 CCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTC 77998 ||||||||| | |||||| |||||||| ||||||||| | | ||| || ||| | Sbjct 99 CCAAACATCTTGCAATCCCCTGCATTCATCTGGGCACATTAGAGTCCAATCTTGATCCTT 40 Query 77999 CTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGC 78037 || ||||| || ||| || |||||||| | ||| || || Sbjct 39 CTCAACTCTTTCCATGAACAGATCAGGAACCCAAAGGGC 1 >seq604 Length=1308 Score = 156 bits (172), Expect = 6e-33 Identities = 366/550 (67%), Gaps = 2/550 (0%) Strand=Plus/Minus Query 78063 TCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 78122 ||||| ||||| |||||| ||| || | |||||| | || |||| ||||||||| Sbjct 1283 TCTTCCTTTCCATGATTCTTCCTAATTTCAATAAACTCTACAACATCAACGTGCCATGGT 1224 Query 78123 TCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCG 78182 || | ||| ||||| || | || || || || || ||||| ||||| || || Sbjct 1223 TCCAAATAAATTGCAATGGCACCTTTACGCTTCCCTCCACCTTGATCAATATACCTAGCA 1164 Query 78183 GTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAA 78242 |||| ||||||||| | || ||| ||||| | || |||||| | ||||||||||| | Sbjct 1163 GTGTCATTATAAACGCGCAGCATCGGAATTAATCCATTAGATCTCCCATTTGTTCCTCGA 1104 Query 78243 ATATAACTTCCACTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTA 78302 ||||| ||| || | | ||||||||| | | | ||| | || ||||| ||||| Sbjct 1103 ATATATGAACCAGTTCCTCTAATATTACTTACTGCCACCCCAAGGCCACCTGCAGTCTTA 1044 Query 78303 GATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATG 78362 || ||||| | | ||| || ||||||| | ||| || || || Sbjct 1043 CTAATGTTTGCGCATTTAGTTAGTGTGTCAAAGATACCGTTTATTGAATCTTCTGGAATC 984 Query 78363 TTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGA 78422 | || | |||||| ||||||||| | | || |||| |||||| | ||| || Sbjct 983 CTGAGTAAAAAACAAGATGACATTTGAGGTCGCGGCGTGCCTGAATTAAAGAGTGTGGGT 924 Query 78423 GATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATG 78482 | |||||| ||||| |||||| || | | | |||||||||| || | ||| || Sbjct 923 GTTGCATGAGTAAAATATTTTTGCGATAACAACTCATATGTTTCAAGTGCAGCTTCAATA 864 Query 78483 TCCCATTGATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTC 78542 || | |||||| || | || ||||||| | ||| || |||||||| || Sbjct 863 TCACCACAATGAATACCACAAGAAACCCGCATCAGAAGATGTTGTGGTCTTTCCACAACT 804 Query 78543 TTATTATTTATTTTCAACAAG-TATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 78601 || || | ||||| || ||| || ||| |||| | |||||| || ||||||| | || Sbjct 803 TTGTTGTCAATTTT-AAGAAGATAGGATCTTTCTAGAGTTTTGAAGGCAAAATAATCATA 745 Query 78602 TGAAAAGTCT 78611 | ||| ||| Sbjct 744 TTCAAAATCT 735 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694660932875840