Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001483535.1_202015-12- 30] 906 sequences; 8,691,536 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq382 223 5e-53 seq604 159 5e-34 seq276 125 1e-23 >seq382 Length=3575 Score = 223 bits (246), Expect = 5e-53 Identities = 588/883 (67%), Gaps = 25/883 (3%) Strand=Plus/Plus Query 46315 TCTTCTTG--TGAC-ATAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAA 46371 || ||||| |||| |||||||| |||| |||||||| || | || ||||| || Sbjct 1600 TCATCTTGATTGACCATAACTCCAGCCATTTGATATTCACCAACTCTCTTTTCGAAGAAG 1659 Query 46372 TTAGTTTTGCCTTCCAATGATATATTTTCCATAAAATCAAACGGATTAGTAACATTATAA 46431 |||||||| |||| | ||| ||| ||||| ||||||| ||||||| ||| || || Sbjct 1660 TTAGTTTTACCTTGAAGTGAAATAAGGTCCATCCAATCAAAAGGATTAGAAACGTTGTAG 1719 Query 46432 AtttttttAA-ATCCTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATACGTTTT 46490 |||||| || |||| || | ||| | |||||| ||||| ||||| ||||| Sbjct 1720 ATTTTTGGAATATCC-AAGGCAAAAAGTAATCTATCAGCAACAAATTCAATATATTGGGC 1778 Query 46491 CATCATTTCACAATTCATTCCTATGAGTTTGACCGGTAGAGCCTCCGTAAGAAACTCTTG 46550 ||| | | | ||||| || || || | || || |||| || |||||| | | Sbjct 1779 CATAAGTCTTGAGTTCATACCAATAAGATCAACAGGAAGAGAGTCACAAAGAAAGTTTCT 1838 Query 46551 TTCAATAGTGACAGCATCCGATATTATCGATGTTACTGTTTCCTCACTTGGTGGATGCA- 46609 ||||| ||||| || ||||| || | |||| | | |||| | | Sbjct 1839 TTCAACTTCAACAGCTTCTGATATGATTTGTTGTACTCTAGGAGC---TGGTAATTTAAA 1895 Query 46610 -TCAAATG-TTTAAACATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAAT 46667 | || | |||| | |||||||| ||||| ||| ||| || |||||||| | |||||| Sbjct 1896 TTTAAGGGCTTTATATATTAAACAAGCAAAGTCAGCATGGAGACCTTCATCACGACTAAT 1955 Query 46668 TAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGC 46727 | ||| |||||||||||||| |||||||| |||||||| ||||| |||||||| || | Sbjct 1956 AAGTTCATTAGAAAATGTGAGTCCAGGCATAAGTCCACGTTTTTTAAGCCAAAAAATTG- 2014 Query 46728 CGCGAAAGAT-CCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTC 46786 | | |||| | |||||||| | || ||||| ||||| |||| | | || ||| || Sbjct 2015 CACAAAAGCTACCAGAAAATAGAATTCCTTCAACAGCACAGAATCCAATAATTCTTTCAG 2074 Query 46787 CGTAACTGGCATCATTATGAATCCA-CCTTTGA---GCCCAATCAGCCTTTTTCTTTACA 46842 | || ||| || |||| || || || | ||||| || || || || || ||| Sbjct 2075 CAAAA----GATCGTTCAGAATTCATCCATTTAGTTGCCCATTCTGCTTTCTTTTTAACA 2130 Query 46843 CAAGGCATTGTTTCTATAGCATTAAAGAGAAAGtttttttCATCACTATCTTTAACATAT 46902 || || || | |||||| | | ||| | | |||| ||| |||| Sbjct 2131 GCTTCAATATGAGAAATTGCTTCAAAGAGCATTTGACGTTCTTTAATATCAGTAATATAT 2190 Query 46903 GTATCTATTA--AAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATC 46960 |||| || | || || ||| |||| ||| || | |||||||| ||| ||||| Sbjct 2191 CTATCAATAAGTAATGA--ATAAGTTTCACTATGTATTTGTTCAATAGACATTTGAAAAG 2248 Query 46961 CGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCT 47020 | ||| | ||| ||||| | || |||| ||| || || | | | || || | Sbjct 2249 CATAATACATTCTGGCTTCTGGTATTTGTATTTCTCTAAGGAAATTTACTGCTAAGTTTT 2308 Query 47021 CATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTT 47080 | | || || |||||||| |||||||| ||||| || || | ||| ||||||| | ||| Sbjct 2309 CCATAACAATGCCATCACTTGCAGCAAAGAATGCTAAGACGTATTTGATAAAATGTCTTT 2368 Query 47081 CATCGGTAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTG 47140 || | | || | | ||| || | |||||| || ||| | ||||||| Sbjct 2369 CAGGGTCTTTAAGACTTTCCCAATCTCTAGTATCTTGACTTAGATCAATCTCTTCAGTAA 2428 Query 47141 TCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATC 47183 ||| ||||| || || |||||||||||||| ||| ||||| Sbjct 2429 CCCAAAATGATGCTTCAGCTTTTTTATACATTGACCAAATATC 2471 >seq604 Length=1308 Score = 159 bits (176), Expect = 5e-34 Identities = 371/555 (67%), Gaps = 6/555 (1%) Strand=Plus/Minus Query 76658 TCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGT 76717 ||||| ||||| |||||| ||| || | ||||| | || |||| ||||||||| Sbjct 1283 TCTTCCTTTCCATGATTCTTCCTAATTTCAATAAACTCTACAACATCAACGTGCCATGGT 1224 Query 76718 TCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCA 76777 || | ||| || || || |||| || || || || ||||| ||||| || ||| Sbjct 1223 TCCAAATAAATTGCAATGGCACCTTTACGCTTCCCTCCACCTTGATCAATATACCTAGCA 1164 Query 76778 GTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAA 76837 |||| ||||||||| | || ||| ||||| | || |||||| | ||||||||||| | Sbjct 1163 GTGTCATTATAAACGCGCAGCATCGGAATTAATCCATTAGATCTCCCATTTGTTCCTCGA 1104 Query 76838 ATATAACTTCCACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTA 76897 ||||| ||| | | | ||||||||| | | | || | || ||||| | ||| Sbjct 1103 ATATATGAACCAGTTCCTCTAATATTACTTACTGCCACCCCAAGGCCACCTGCAGTCTTA 1044 Query 76898 --GAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCA 76955 | || | ||| ||| | ||||||| |||| || | ||| ||| || | Sbjct 1043 CTAATGTTTGCGCATTTAGTT--AGTGTGTCAAAGATACCGTTTATTGAATCTTCTGGAA 986 Query 76956 TGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAG 77015 | | || | |||||| ||||||||| | | || |||| |||||| | ||| | Sbjct 985 TCCTGAGTAAAAAACAAGATGACATTTGAGGTCGCGGCGTGCCTGAATTAAAGAGTGTGG 926 Query 77016 GAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTA 77075 | | ||||||||| || |||||| || | | | |||||||||| | ||||| | Sbjct 925 GTGTTGCATGAGTAAAATATTTTTGCGATAACAACTCATATGTTTCAAGTGCAGCTTCAA 866 Query 77076 TATCCCATTGATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAG 77135 |||| | |||||| || || || ||||||| | ||| || |||| ||| ||| Sbjct 865 TATCACCACAATGAATACCACAAGAAACCCGCATCAGAAGATGTTGTGGTCTTTCCACAA 806 Query 77136 TCTTATTATTTATTTTCAACAAG-TATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTG 77194 || || | ||||| || ||| || ||| |||| | |||||| || ||||||| | Sbjct 805 CTTTGTTGTCAATTTT-AAGAAGATAGGATCTTTCTAGAGTTTTGAAGGCAAAATAATCA 747 Query 77195 TATGAAAAGTCTCTT 77209 ||| ||| ||| || Sbjct 746 TATTCAAAATCTTTT 732 >seq276 Length=6140 Score = 125 bits (138), Expect = 1e-23 Identities = 785/1244 (63%), Gaps = 40/1244 (3%) Strand=Plus/Minus Query 75415 ATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTT 75474 ||| || || || ||||||||||| |||| || || |||||||| || || || Sbjct 1230 ATAATAAATGCCTGTTTTTAGACCTTTTTTCCAACCATAAAAATGCATAGATGATAACTT 1171 Query 75475 GGAATAACTCGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCC 75534 | | | | | || | ||||| || |||| || || |||| | | | || Sbjct 1170 TGCAAAGTTAGCATTTTCCATATGGATGTTCAAAGATTGCGATTGACAAACATATGGACC 1111 Query 75535 TCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAAC 75594 ||||| || ||||| | || | |||||||| |||||||| | ||| || ||| Sbjct 1110 CCTATCTGCAGCCATATCAATTACTGTCTTTTGCTTGATTTCCCATACAGTCTTATAAAG 1051 Query 75595 TTGTTTGATATCATCTGGAAGATT---TGTATTTTGAATGGATCCGCCATCAGATATAAT 75651 | ||||| || |||| | | |||||||||| | ||||| | | ||| Sbjct 1050 CTCACGTATATCCTCCGGAATTGTAAGTATATTTTGAATA---CTGCCATTATTTGCAAT 994 Query 75652 TGTATTCT---TGATCTCATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATG 75708 |||||| | | | ||||| ||| || ||| |||| | | || | || Sbjct 993 AATATTCTGTTTAAGCCTATCATCCCATAACCCAAGCTCTAGTAAATCATTTAGCAAGTG 934 Query 75709 AGGATTAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATA 75768 ||||| || | || || ||||| | ||| || ||| ||||| || ||| | Sbjct 933 CGGATTTACTACAAAGAACTCACCAGATAGTACCCTACGATGATAAATGTTCGAGGTGAA 874 Query 75769 TGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGC 75828 ||| || | | |||||||| || |||||||| | ||| || || || ||||| || | Sbjct 873 TGGCTCAAAACTCTCATTGTTACCTAAAATTTGTGAAGTGGATGCTGTTGGCATTGGAGA 814 Query 75829 CACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATC 75888 | ||||| | ||| | | ||||| | | || ||||||| || | | |||||| Sbjct 813 TATCAATAGAGAATTACGAATACCATATTTGGAAATCCTATCTTTAAGCGAATCCCAATC 754 Query 75889 CCAAAGATCTGA---TGGTACAACATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAGC 75945 ||||| | || |||| ||| |||| | ||| |||||| ||| || || || || Sbjct 753 ACAAAGTCCAGAGTCTGGTGTAACTCCCCACATATCAAATTGTAAAATACCCTTACTCGC 694 Query 75946 ATATGATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTC 76005 | || || |||||||||||| | || | ||||| || || || || || || || Sbjct 693 AGGCGAACCGGAATATGTTTCGTATGGACCATATTTTTCTGCAAGCTCACAGCTAGCATC 634 Query 76006 TAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTA-TTAAGATCTT-GCGCTTCAAGA 76063 | || | ||||| || ||| || || | ||| |||| |||| || | ||| Sbjct 633 GAGAGCTGCATAATAGATAACTTCAAAGATTTGTTTATTTAACTTCTTAGCTCCCTCAGA 574 Query 76064 CTATCAAAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCA 76123 | || | || | | | | || || ||||| || || |||| ||||| || Sbjct 573 C--TCGTATGGCATACGAAGCATCATGAAACAGTCTGCGAGCCCTTGAATGCCAATCCCC 516 Query 76124 ATAGGTCTATGTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCT 76183 | || | |||||| ||| || ||| | |||| || || ||||| || || Sbjct 515 AATGGACGATGTCTTAAATTCGAGTTTTTACATTCTTTAAGAGAATAATATCCAACGTCA 456 Query 76184 ATAATTTTATTGAGATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCA 76243 || | |||||| | ||| || || || || || || |||| || ||||||| Sbjct 455 ATCAATTTATTCAAATTCCTCGTAATCACCTTCGTAACTTCTTTTAACTTATCAAAATCA 396 Query 76244 AA-----TTTTCCATCTATC-ACAAACATATTAAGAGCTATAGATGCTAGATTACAAACG 76297 || | || | |||| || ||| | ||| | ||||| || |||||||||||| Sbjct 395 AACGTCTTGTTATTTTTATCAACGAACTTTGGAAGGCCAATAGACGCCAGATTACAAACG 336 Query 76298 GCTACCTCAT--TAGCATTGGCATATTGTATTATCTCCGTGCATAGATTACTACACTTGA 76355 || || || | | || | | |||| ||| || || ||||||| ||||| | | Sbjct 335 GCAACTTCGTCCTTGC--TAGTGTATTCTATGATTTCTGTGCATAAGTTACTTGAAACAA 278 Query 76356 TAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACATG-AG--TCCTTATAAAGAACAA 76412 ||||||| | ||||| ||||| | ||||| || || || || |||||| || || Sbjct 277 TAGTTCCCAAATTTTTCTGGTTAC---TTTTGCTATTTGCAGCATCTTTATAACAAATAA 221 Query 76413 ACGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTA 76472 | || || || || ||||| || | | | || | ||| | | ||| || || Sbjct 220 ATGGTGTCCCCGTCTCAATTTGAGCCTGTAAGATTAAGAACCA-AAGTTTCT-GCGCTT- 164 Query 76473 TTATAGATTTGTATC----GCTTCTCTCTTTCATATTGTGTATATAACCGTTCAAATTCA 76528 | || | ||| || || | | | | ||||| | | ||||| | | ||| ||| Sbjct 163 TCATCGTTTTCCTTCCACGGCCT-TGTTTCTCATACTCTTCATATAGCTTCTTAAAATCA 105 Query 76529 TCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGACCACTCACCA 76588 || ||||||||||| | ||| || ||||||| || ||||| | | ||| || | Sbjct 104 TCGCCCCAAACATCTTGCAATCCCCTGCATTCATCTGGGCACATTAGAGTCCAATCTTGA 45 Query 76589 TCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGC 76632 || | || ||| | || ||| || |||||||| | ||| || || Sbjct 44 TCCTTCTCAACTCTTTCCATGAACAGATCAGGAACCCAAAGGGC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712926326017920