Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001593465.1_202016-03- 17] 119 sequences; 9,107,739 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq101 105 7e-18 >seq101 Length=510706 Score = 105 bits (116), Expect = 7e-18 Identities = 268/398 (67%), Gaps = 20/398 (5%) Strand=Plus/Plus Query 16674 TTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCT 16733 |||| || || | ||| | |||||||| ||||||||||| || | || || ||| | Sbjct 53163 TTTGATATTCACCAACTCTCTTTTCGAAGAAGTTAGTTTTACCTTGAAGTGAAATAAGGT 53222 Query 16734 CCATGAAATCAAAAGGATTAGTA--GCTGAAAATATTTTAGAGTACCCCAGTTCGGCGAT 16791 |||| ||||||||||||||| | | || | || |||| || || || || | | Sbjct 53223 CCATCCAATCAAAAGGATTAGAAACGTTGTAGAT-TTTTGGAATATCCAAG-GCAAAAAG 53280 Query 16792 TAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAG 16851 ||||||||| || |||||||| ||||||||| ||| | | ||||||| || ||||| Sbjct 53281 TAATCTATCAGCAACAAATTCAATATATTGGGCCATAAGTCTTGAGTTCATACCAATAAG 53340 Query 16852 ACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGC--TCTATAACAACCGCTTCCTTAATA 16909 | || ||||||| || |||| | ||| | || | |||| ||||| | ||| Sbjct 53341 ATCAACAGGAAGAGAGTC--ACAAAGAAAGTTTCTTTCAACTTCAACAGCTTC--TGATA 53396 Query 16910 ATACTAGCAACTCGTTC-CTCGGA-CGG----TGTATGTTTAAGATGTTTAAACATCAGA 16963 | | | | || | || ||| | | | || |||||| |||| | || | | Sbjct 53397 TGATTTG----TTGTACTCTAGGAGCTGGTAATTTAAATTTAAGGGCTTTATATATTAAA 53452 Query 16964 CATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAAC 17023 || || || || ||| | || || || | || |||||||| ||||||||||| | Sbjct 53453 CAAGCAAAGTCAGCATGGAGACCTTCATCACGACTAATAAGTTCATTAGAAAATGTGAGT 53512 Query 17024 CCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGC 17061 || ||||| ||| ||||| || | |||||| || || Sbjct 53513 CCAGGCATAAGTCCACGTTTTTTAAGCCAAAAAATTGC 53550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517544830150920