Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001593465.1_202016-03- 17] 119 sequences; 9,107,739 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq101 284 1e-71 >seq101 Length=510706 Score = 284 bits (314), Expect = 1e-71 Identities = 1188/1857 (64%), Gaps = 40/1857 (2%) Strand=Plus/Minus Query 52807 TGTGAATTGAATGGGAGCGGAT-GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTA 52865 ||| ||||| ||||| ||| | ||| || || | | ||| || || || ||||||| Sbjct 332285 TGTAAATTGTATGGG-GCGTGTCGCGCTTTGGGTCCTCAAATAATAAATGCCTGTTTTTA 332227 Query 52866 GACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTA 52925 |||| |||| || |||||||||||| || || || | | | | | || | | | Sbjct 332226 GACCTTTTTTCCAACCATAAAAATGCATAGATGATAACTTTGCAAAGTTAGCATTTTCCA 332167 Query 52926 TATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTA 52985 ||||||| |||| |||||| |||| | | | ||||| ||||||||||| | | Sbjct 332166 TATGGATGTTCAAAGATTGCGATTGACAAACATATGGACCCCTATCTGCAGCCATATCAA 332107 Query 52986 TGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAA-CTCGCTTAATATCTTCTGGA 53044 | | |||||||| |||||||| | ||| ||||||| ||| | | ||||| || ||| Sbjct 332106 TTACTGTCTTTTGCTTGATTTCCCATACAGTCTTATAAAGCTCACGT-ATATCCTCCGGA 332048 Query 53045 A-GGT--TTGTATTCTGAATAGATCCACCATCTACCATAATCCTATTCTTGATCTCATCA 53101 | || | |||| |||||| ||| || | | ||||| | | ||| | | |||| Sbjct 332047 ATTGTAAGTATATTTTGAATACTGCCATTATTTGCAATAATATTCTGCTTAAGCCTATCA 331988 Query 53102 TTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCT 53161 | |||||| ||| |||| | | || | |||||||| ||||| || || Sbjct 331987 TCCCATAACCCAAGCTCTAGTAAATCATTTAGCAAGTGCGGATTTACTACAAAGAACTCA 331928 Query 53162 CCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTT 53221 ||||| | ||| || ||| ||||| || ||| | || || | | |||||| || Sbjct 331927 CCAGATAGTACCCTACGATGATAAATGTTCGAGGTGAATGGCTCAAAACTCTCATTGTTA 331868 Query 53222 CCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGA 53281 || |||||||| | ||| ||||| || ||||| || | | ||||| | ||| | || | Sbjct 331867 CCTAAAATTTGTGAAGTGGATGCTGTTGGCATTGGAGATATCAATAGAGAATTACGAATA 331808 Query 53282 CCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGA---CGGTACA 53338 || ||| | || ||||||| || | ||||||| ||||| | || ||| | Sbjct 331807 CCATATTTGGAAATCCTATCTTTAAGCGAATCCCAATCACAAAGTCCAGAGTCTGGTGTA 331748 Query 53339 ACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCG 53398 || ||||| |||||| ||||| || ||| || |||||| ||| Sbjct 331747 ACTCCCCACATATCAAATTGTAAAATACCCTTACTCGCAGGCGAACCGGAATATGTTTCG 331688 Query 53399 TATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTT 53458 ||||| || | || || || || ||||| || || || | || | ||||| || | Sbjct 331687 TATGGACCATATTTTTCTGCAAGCTCACAGCTAGCATCGAGAGCTGCATAATAGATAACT 331628 Query 53459 TCGAAGATCTTCTTATTTAGATCTTGTGCTTC--CAGGCTATCAAATGG-ATAATTTAAG 53515 || ||||| | ||||||| | | ||| | ||| | || |||| ||| ||| Sbjct 331627 TCAAAGATTTGTTTATTTAACTTCTTAGCTCCCTCAGAC--TCGTATGGCATA--CGAAG 331572 Query 53516 -AGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATT 53574 | || || |||||| | ||||||| ||||| || | || | |||||| ||| Sbjct 331571 CATCATGAAACAGTCTGCGAGCCCTTGAATGCCAATCCCCAATGGACGATGTCTTAAATT 331512 Query 53575 AGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGGTTTCT 53634 ||| || | |||| || || |||||| || || || | |||||| | || || Sbjct 331511 CGAGTTTGTACATTCTTTAAGAGAATAATATCCAACGTCAATCAATTTATTCAAATTCCT 331452 Query 53635 GACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA----TTGTCCATCTATTA 53690 ||| || || || || || | || ||||||||| |||| || | | Sbjct 331451 CGTAATCACCTTCGTAACTTCTTTTAACTTATCAAAATCAAACGTCTTGT-TATTTTTAT 331393 Query 53691 CAA--ACATGTTCAATG-CAATAGATGCCAGATTACAAACGGCTACCTCAT--TAGCATC 53745 ||| | | | || | ||||||| ||||||||||||||||| || || | | || Sbjct 331392 CAACGAACTTTGGAAGGCCAATAGACGCCAGATTACAAACGGCAACTTCGTCCTTGC--T 331335 Query 53746 CGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTG 53805 | |||| ||| || || ||||| | ||||| | || ||||| ||||||| || Sbjct 331334 AGTGTATTCTATGATTTCTGTGCATAAGTTACTTGAAACAATAGTTCCCAAATTTTTCTG 331275 Query 53806 ATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTG 53865 ||||| || | || ||||| |||||| ||| ||||| || || || ||||| || Sbjct 331274 GTTACTTTTGCTATTTGCAGCATCTTTATAACAAATAAATGGTGTCCCCGTCTCAATTTG 331215 Query 53866 GGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTTGTATCTCTTTTC 53925 | | || || ||| | | || || || | || | | | Sbjct 331214 AGCCTGTAAGATTAAGAACCAAAGTTTCTGCGCTTTCATCGT--TTTCCTTCCACGGCCT 331157 Query 53926 TCTTTCGTATAGTGT--ATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCA 53983 | |||| ||| | | ||| | | ||| || || |||||||||| | |||||| Sbjct 331156 TGTTTCTCATACTCTTCATATAGCTTCTTAAAATCATCGCCCCAAACATCTTGCAATCCC 331097 Query 53984 GGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTC---ACTCGTTTCATA 54040 |||||||| || ||||| | | ||| ||| | ||||||| |||| || ||| Sbjct 331096 CTGCATTCATCTGGGCACATTAGAGTCCAATCT---TGATCCTTCTCAACTCTTTCCATG 331040 Query 54041 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCT 54100 || |||||||||| |||||| || ||| ||||| | ||| || || ||||| Sbjct 331039 AACAGATCAGGAACCCAAAGGGCAGGAAAGAGATCGCGACATCTCATCTCTTCCTTTCCA 330980 Query 54101 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 54160 |||||| ||| || | ||| | | || |||| ||||| |||||||| || || Sbjct 330979 TGATTCTTCCTAATTTCAATAAACTCTACAACATCAACGTGCCATGGTTCCAAATAAATT 330920 Query 54161 GTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 54220 | || | || || || ||| || ||||| || || ||||| |||| ||||||| Sbjct 330919 GCAATGGCACCTTTACGCTTCCCTCCACCTTGATCAATATACCTAGCAGTGTCATTATAA 330860 Query 54221 ACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA 54280 || | || ||| ||||| | ||||| ||| ||||| || || ||||| ||| Sbjct 330859 ACGCGCAGCATCGGAATTAATCCATTAGATCTCCCATTTGTTCCTCGAATATATGAACCA 330800 Query 54281 CTGGCACGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCG 54340 | | | ||||||||| | || | || | || ||||| | ||| || |||| Sbjct 330799 GTTCCTCTAATATTACTTACTGCCACCCCAAGGCCACCTGCAGTCTTACTAATGTTTGCG 330740 Query 54341 CATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAA 54400 ||| ||| || ||| |||| || | ||| ||| || || | |||| |||| Sbjct 330739 CATTTAGTTAGTGTGTCAAAGATACCGTTTATTGAATCTTCTGGAATCCTGAGTAAAAAA 330680 Query 54401 CAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTA 54460 || |||||||| | || || || | |||||| | || || | || || ||| Sbjct 330679 CAAGATGACATTTGAGGTCGCGGCGTGCCTGAATTAAAGAGTGTGGGTGTTGCATGAGTA 330620 Query 54461 AACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGA 54520 || |||||| || | | | || || || | || | || ||||| | |||| Sbjct 330619 AAATATTTTTGCGATAACAACTCATATGTTTCAAGTGCAGCTTCAATATCACCACAATGA 330560 Query 54521 ATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATT 54580 || || | || ||||| | | || || |||||||| || | ||||||| ||| Sbjct 330559 ATACCACAAGAAACCCGCATCAGAAGATGTTGTGGTCTTTCCACAACTTTGTTGTCAATT 330500 Query 54581 TTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCT 54637 || || | |||||| |||| | |||||| || ||||||| | ||| ||| ||| Sbjct 330499 TTAAGAAGATAGGATCTTTCTAGAGTTTTGAAGGCAAAATAATCATATTCAAAATCT 330443 Score = 233 bits (258), Expect = 2e-56 Identities = 588/877 (67%), Gaps = 35/877 (4%) Strand=Plus/Plus Query 23819 GTCTTCTTGA--GAC-ATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAA 23875 ||| |||||| ||| |||||||| |||| |||||||| || | |||||||| || Sbjct 53134 GTCATCTTGATTGACCATAACTCCAGCCATTTGATATTCACCAACTCTCTTTTCGAAGAA 53193 Query 23876 ATTAGTTTTACCTTCTAATGATATATTTTCCATGAAATCGGATGGATTGGTAACATTATA 23935 ||||||||||||| | ||| ||| ||||| |||| | ||||| | ||| || || Sbjct 53194 GTTAGTTTTACCTTGAAGTGAAATAAGGTCCATCCAATCAAAAGGATTAGAAACGTTGTA 53253 Query 23936 GATTCTTTTAAATCCCAATTCAGAAATCAATCTATCTGCGACAAACTCCATATATGTTTT 23995 |||| || || |||| || ||| |||||||| || ||||| || |||||| Sbjct 53254 GATTTTTGGAATATCCAAGGCAAAAAGTAATCTATCAGCAACAAATTCAATATATTGGGC 53313 Query 23996 CATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTG 24055 ||| | | | ||||| || ||||| | ||| ||||||| || |||||| | | Sbjct 53314 CATAAGTCTTGAGTTCATACCAATAAGATCAACAGGAAGAGAGTCACAAAGAAAGTTTCT 53373 Query 24056 TTCAATAGAGACCGCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGGTGGA----T 24111 ||||| || || |||| ||| || | |||| | | | ||| | Sbjct 53374 TTCAACTTCAACAGCTTCTGATATGATTTGTTGTACTCT------AGGAGCTGGTAATTT 53427 Query 24112 ACAATAAATG--TTTAAACATCAAACATGCGAAATC-GCAGTGTAGACCCTCGTCTCTAC 24168 | | | || | |||| | || ||||| || || || ||| || ||||| || || | || Sbjct 53428 AAATTTAAGGGCTTTATATATTAAACAAGCAAAGTCAGCA-TGGAGACCTTCATCACGAC 53486 Query 24169 TAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATA 24228 |||| | ||| || ||||| |||||||| ||||| || ||||| |||||||||||||| | Sbjct 53487 TAATAAGTTCATTAGAAAATGTGAGTCCAGGCATAAGTCCACGTTTTTTAAGCCAAAAAA 53546 Query 24229 TGGACGCAAATGAT-CCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTT 24287 | | | |||| | | |||||||| | ||||||||| || || || |||||| |||| Sbjct 53547 TTG-CACAAAAGCTACCAGAAAATAGAATTCCTTCAACAGCACAGAATCCAATAATTCTT 53605 Query 24288 TCTCCATAACCGGCGCTGTC---ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTT 24344 || || || | | || || ||||| || ||||| || || |||||||| Sbjct 53606 TCAGCAAAA---GATCGTTCAGAATTCATCCATTTAGTTGCCCATTCTGCTTTCTTTTTA 53662 Query 24345 ACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACA 24404 ||| || || || | |||||| | ||| ||| |||| ||| | Sbjct 53663 ACAGCTTCAATATGAGAAATTGCTTCAAAGAGCATTTGACGTTCTTTAATATCAGTAATA 53722 Query 24405 TATGTATCAATCA--AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAA 24462 ||| ||||||| | || || ||| |||| ||| || | |||||| | |||||||| Sbjct 53723 TATCTATCAATAAGTAATGA--ATAAGTTTCACTATGTATTTGTTCAATAGACATTTGAA 53780 Query 24463 ATCCGTAGAAACA-TCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAA 24521 | | || | ||| ||| || || | || |||| |||| || || | ||||||| Sbjct 53781 AAGCATA-ATACATTCTGGCTTCTGGTATTTGTATTTCTCTAAGGAAATTTACTGCTAAG 53839 Query 24522 TTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATAT 24581 ||||| | || || || ||||| || ||||| || || || || | ||| ||||||| | Sbjct 53840 TTTTCCATAACAATGCCATCACTTGCAGCAAAGAATGCTAAGACGTATTTGATAAAATGT 53899 Query 24582 TTTTCGTCTGGTGTT--AGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTT 24639 |||| ||| || || | | |||||| | |||||| | || ||| | |||| Sbjct 53900 CTTTC--AGGGTCTTTAAGACTTTCCCAATCTCTAGTATCTTGACTTAGATCAATCTCTT 53957 Query 24640 CCACTGTCCAAAATGATGCCTCTGCCTTTTTATACAT 24676 | |||||||||||| || || ||||||||||| Sbjct 53958 CAGTAACCCAAAATGATGCTTCAGCTTTTTTATACAT 53994 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593720716839120