Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001593465.1_202016-03- 17] 119 sequences; 9,107,739 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq53 149 9e-31 seq88 143 4e-29 seq102 104 4e-17 >seq53 Length=978 Score = 149 bits (164), Expect = 9e-31 Identities = 173/231 (75%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | ||||| | ||||| || ||||| ||| | || ||||| | Sbjct 277 ATGCAGATTTTTGTCAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTTGAACCTTCA 218 Query 124599 GATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||||||| ||| |||| || || ||||||||||| || || || ||||||||||| Sbjct 217 GATACAATTGAGAATGTTAAGGCA-AAGATTCAAGATAAGGAGGGAATCCCACCTGATCA 159 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||| | | || |||||||||||||||||||||||| || |||| | || || || Sbjct 158 ACAACGTTTGATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTCTGACTACAA 99 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||||||||| || ||||| ||||| || || | | |||||||||| Sbjct 98 CATTCAAAAAGAGTCTACTTTACATTTAGTATTGAGGCTCAGAGGTGGTAT 48 Score = 149 bits (164), Expect = 9e-31 Identities = 173/231 (75%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | ||||| | ||||| || ||||| ||| | || ||||| | Sbjct 733 ATGCAGATTTTTGTCAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTTGAACCTTCA 674 Query 124599 GATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||||||| ||| |||| || || ||||||||||| || || || ||||||||||| Sbjct 673 GATACAATTGAGAATGTTAAGGCA-AAGATTCAAGATAAGGAGGGAATCCCACCTGATCA 615 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||| | | || |||||||||||||||||||||||| || |||| | || || || Sbjct 614 ACAACGTTTGATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTCTGACTACAA 555 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||||||||| || ||||| ||||| || || | | |||||||||| Sbjct 554 CATTCAAAAAGAGTCTACTTTACATTTAGTATTGAGGCTCAGAGGTGGTAT 504 Score = 143 bits (158), Expect = 4e-29 Identities = 172/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | ||||| | ||||| || ||||| ||| | || ||||| | Sbjct 505 ATGCAGATTTTCGTTAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTTGAACCTTCA 446 Query 124599 GATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||||||| ||| |||| || || ||||| ||||| ||||| || ||||||||||| Sbjct 445 GATACAATTGAGAATGTTAAGGCA-AAGATTCAGGATAAGGAAGGAATCCCACCTGATCA 387 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||| | | || |||||||||||||||||||||||| || |||| | ||||| || Sbjct 386 ACAACGTTTGATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTCTGATTACAA 327 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||||||||| || ||||| || || || || | | |||||||||| Sbjct 326 CATTCAAAAAGAGTCCACTTTACACTTAGTCTTGAGACTTAGAGGTGGTAT 276 Score = 143 bits (158), Expect = 4e-29 Identities = 172/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | ||||| | ||||| || ||||| ||| | || ||||| | Sbjct 961 ATGCAGATTTTCGTTAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTTGAACCTTCA 902 Query 124599 GATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||||||| ||| |||| || || ||||| ||||| ||||| || ||||||||||| Sbjct 901 GATACAATTGAGAATGTTAAGGCA-AAGATTCAGGATAAGGAAGGAATCCCACCTGATCA 843 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||| | | || |||||||||||||||||||||||| || |||| | ||||| || Sbjct 842 ACAACGTTTGATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTCTGATTACAA 783 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||||||||| || ||||| || || || || | | |||||||||| Sbjct 782 CATTCAAAAAGAGTCCACTTTACACTTAGTCTTGAGACTTAGAGGTGGTAT 732 >seq88 Length=50168 Score = 143 bits (158), Expect = 4e-29 Identities = 167/222 (75%), Gaps = 5/222 (2%) Strand=Plus/Plus Query 124533 AATACAA---TGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATT 124589 ||||||| |||| || ||| | ||||| | ||||| || ||||| ||| | || || Sbjct 13563 AATACAAATATGCAGATTTTTGTTAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTT 13622 Query 124590 GAAGCAAATGATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACC 124648 ||| | ||||||||| ||| |||| || || ||||| ||||| ||||| || || Sbjct 13623 GAACCTTCAGATACAATTGAGAATGTTAAGGCA-AAGATTCAGGATAAGGAAGGAATCCC 13681 Query 124649 ACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGA 124708 ||||||||||||| | | || |||||||||||||||||||||||| || |||| | Sbjct 13682 ACCTGATCAACAACGTTTGATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTC 13741 Query 124709 AGATTATAATATTCAAAAAGAATCAACTTTGCATTTGGTTTT 124750 ||||| || ||||||||||| || ||||| || || || || Sbjct 13742 TGATTACAACATTCAAAAAGAGTCCACTTTACACTTAGTCTT 13783 >seq102 Length=1270815 Score = 104 bits (114), Expect = 4e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | || || ||||||| || || || || | || ||||| | Sbjct 544752 ATGCAAATTTTTGTCAAAACTTTAACAGGAAAGACCATCACATTGGAAGTTGAACCTTCC 544693 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| ||| |||| || || || ||||| || || || || ||||||||| Sbjct 544692 GATACTATTGAGAATGTAAAGGCAAAGATCCAGGATAAGGAGGGCATTCCTCCTGATCAA 544633 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | || || ||||| ||||| ||||| || ||| || |||| || || || ||| Sbjct 544632 CAGCGTCTGATCTTTGCTGGAAAGCAATTGGAAGATGGTAGAACTCTATCTGACTACAAT 544573 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTT 124750 || || || || || ||||||||||| || || Sbjct 544572 ATCCAGAAGGAGTCCACTTTGCATTTAGTATT 544541 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755454876259200