Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001593465.1_202016-03- 17] 119 sequences; 9,107,739 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq102 100 3e-16 seq88 95.1 1e-14 seq53 93.3 4e-14 >seq102 Length=1270815 Score = 100 bits (110), Expect = 3e-16 Identities = 163/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||||||||| || || ||| | ||||| || || ||||| | || |||||||| Sbjct 544755 AAGATGCAAATTTTTGTCAAAACTTTAACAGGAAAGACCATCACATTGGAAGTTGAACCT 544696 Query 31250 TCCGACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 ||||| | | | || | || || || || || ||| ||||| ||| | || || || Sbjct 544695 TCCGATACTATTGAGAATGTAAAGGCAAAG-ATCCAGGATAAGGAGGGCATTCCTCCTGA 544637 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368 || |||||||| || || ||||| || || |||||||| || ||| | || || Sbjct 544636 TCAACAGCGTCTGATCTTTGCTGGAAAGCAATTGGAAGATGGTAGAACTCTATCTGACTA 544577 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 || || || || || || ||| | ||| | ||| | ||||| || |||||| Sbjct 544576 CAATATCCAGAAGGAGTCCACTTTGCATTTAGTATTGAGACTTAGAGGCGGT 544525 >seq88 Length=50168 Score = 95.1 bits (104), Expect = 1e-14 Identities = 166/238 (70%), Gaps = 3/238 (1%) Strand=Plus/Plus Query 31184 GAAT-CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGT 31242 |||| |||| ||||| ||||| || |||||| ||||||| || || ||||| | || || Sbjct 13562 GAATACAAATATGCAGATTTTTGTTAAGACTTTGACAGGAAAGACTATCACTTTGGAAGT 13621 Query 31243 TGAACCGTCCGACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGC 31301 |||||| || || | | || | || || || ||| | ||| |||||||| | | Sbjct 13622 TGAACCTTCAGATACAATTGAGAATGTTAAGGCAAAGATTCA-GGATAAGGAAGGAATCC 13680 Query 31302 CGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGA 31361 | || || || || ||| | || || || || ||||| || || || || ||| | Sbjct 13681 CACCTGATCAACAACGTTTGATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCT 13740 Query 31362 GCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||| |||||||||||||| || ||| | || | || | ||||| || ||||| Sbjct 13741 CTGATTACAACATTCAAAAAGAGTCCACTTTACACTTAGTCTTGAGACTTAGAGGCGG 13798 >seq53 Length=978 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| |||||| ||||||| || || ||||| | || |||||||| || Sbjct 505 ATGCAGATTTTCGTTAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTTGAACCTTCA 446 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | | || | || || || ||| | ||| |||||||| | || || || || Sbjct 445 GATACAATTGAGAATGTTAAGGCAAAGATTCA-GGATAAGGAAGGAATCCCACCTGATCA 387 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 || ||| | || || || || ||||| || || || || ||| | ||||| || Sbjct 386 ACAACGTTTGATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTCTGATTACAA 327 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 |||||||||||| || ||| | || | || | ||||| || || |||| Sbjct 326 CATTCAAAAAGAGTCCACTTTACACTTAGTCTTGAGACTTAGAGGTGGTA 277 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| |||||| ||||||| || || ||||| | || |||||||| || Sbjct 961 ATGCAGATTTTCGTTAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTTGAACCTTCA 902 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | | || | || || || ||| | ||| |||||||| | || || || || Sbjct 901 GATACAATTGAGAATGTTAAGGCAAAGATTCA-GGATAAGGAAGGAATCCCACCTGATCA 843 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 || ||| | || || || || ||||| || || || || ||| | ||||| || Sbjct 842 ACAACGTTTGATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTCTGATTACAA 783 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 |||||||||||| || ||| | || | || | ||||| || || |||| Sbjct 782 CATTCAAAAAGAGTCCACTTTACACTTAGTCTTGAGACTTAGAGGTGGTA 733 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445765736922480