Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001593465.1_202016-03- 17] 119 sequences; 9,107,739 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq53 93.3 4e-14 seq88 91.5 1e-13 >seq53 Length=978 Score = 93.3 bits (102), Expect = 4e-14 Identities = 151/215 (70%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 139552 CAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTC 139611 ||| |||||||| | || ||||||||||||||||| ||||| | || || || Sbjct 293 CAAGACTAAGTGTAAAGTGGACTCTTTTTGAATGTTGTAATCAGAGAGAGTTCTACCATC 352 Query 139612 TTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 139671 || | ||||| || ||| |||||| |||||| ||||| || || || ||||| || || Sbjct 353 CTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGGGATTCCTTCCTTATC 412 Query 139672 GGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCG 139730 ||| | |||| ||| | | || | ||| || | || || || || | || | | Sbjct 413 -CTGAATCTTTGCCTTAACATTCTCAATTGTATCTGAAGGTTCAACTTCCAAAGTGATAG 471 Query 139731 TCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||| || ||||| || || ||||| || |||||| Sbjct 472 TCTTTCCTGTCAAAGTCTTAACGAAAATCTGCATA 506 Score = 93.3 bits (102), Expect = 4e-14 Identities = 151/215 (70%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 139552 CAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTC 139611 ||| |||||||| | || ||||||||||||||||| ||||| | || || || Sbjct 749 CAAGACTAAGTGTAAAGTGGACTCTTTTTGAATGTTGTAATCAGAGAGAGTTCTACCATC 808 Query 139612 TTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 139671 || | ||||| || ||| |||||| |||||| ||||| || || || ||||| || || Sbjct 809 CTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGGGATTCCTTCCTTATC 868 Query 139672 GGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCG 139730 ||| | |||| ||| | | || | ||| || | || || || || | || | | Sbjct 869 -CTGAATCTTTGCCTTAACATTCTCAATTGTATCTGAAGGTTCAACTTCCAAAGTGATAG 927 Query 139731 TCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||| || ||||| || || ||||| || |||||| Sbjct 928 TCTTTCCTGTCAAAGTCTTAACGAAAATCTGCATA 962 >seq88 Length=50168 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||||| | | ||| |||||||| | || ||||||||||||||||| ||||| Sbjct 13798 CCGCCTCTAAGTCTCAAGACTAAGTGTAAAGTGGACTCTTTTTGAATGTTGTAATCAGAG 13739 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || || || | ||||| || ||| |||||| |||||| ||||| || || Sbjct 13738 AGAGTTCTACCATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGGG 13679 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| || || ||| | |||| ||| | | || | ||| || | || || || Sbjct 13678 ATTCCTTCCTTATC-CTGAATCTTTGCCTTAACATTCTCAATTGTATCTGAAGGTTCAAC 13620 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | ||||| || ||||| || || || || || |||||| Sbjct 13619 TTCCAAAGTGATAGTCTTTCCTGTCAAAGTCTTAACAAAAATCTGCATA 13571 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496063262104800