Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001593465.1_202016-03- 17] 119 sequences; 9,107,739 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq101 269 3e-67 >seq101 Length=510706 Score = 269 bits (298), Expect = 3e-67 Identities = 597/875 (68%), Gaps = 39/875 (4%) Strand=Plus/Plus Query 13582 TTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTT 13641 |||||||||||| |||||| ||||| ||||||||||||||||||| ||||| ||| | Sbjct 53163 TTTGATATTCACCAACTCTCTTTTCGAAGAAGTTAGTTTTACCTTGAAGTGAAATAAGGT 53222 Query 13642 CCATAAAATCAAATGGATTTATTGACATAA-ACACTTTATCACAACCTAGTTCTAATAGT 13700 |||| ||||||| ||||| | || | | | ||| | | | | | || ||| Sbjct 53223 CCATCCAATCAAAAGGATT-AGAAACGTTGTAGATTTTTGGAATATCCAAGGCAAAAAGT 53281 Query 13701 AATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAA-TTCATACCTATTAG 13759 ||||||||||||| ||| ||||||||||| | ||| || || | |||||||| || || Sbjct 53282 AATCTATCAGCAACAAATTCAATATATTGGGCCAT-AAGTCTTGAGTTCATACCAATAAG 53340 Query 13760 TTTTACAGGAATTATATTGGTTAA-AAATTCTTTTTCTATAGACACAGCCTCTTTTATAA 13818 | ||||||| | | | || ||| | | |||| | ||||| ||| ||| | Sbjct 53341 ATCAACAGGAAG-AGAGTCACAAAGAAAGTTTCTTTCAACTTCAACAGCTTCTGATATGA 53399 Query 13819 TAATTGTAATAATCTCATTAGAAGGAGG------ATATTTTAGATGTTTAAAAATTAAAC 13872 | |||| || ||| || || || | |||| || |||| | ||||||| Sbjct 53400 T--TTGTTGTACTCT----AGGAGCTGGTAATTTAAATTTAAGGGCTTTATATATTAAAC 53453 Query 13873 ACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATC 13932 | ||||| ||| ||| || || ||||| | |||||||||||| || |||||||| | || Sbjct 53454 AAGCAAAGTCAGCATGGAGACCTTCATCACGACTAATAAGTTCATTAGAAAATGTGAGTC 53513 Query 13933 CTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATA 13992 | ||||| | ||| |||||||| | |||||| |||||| ||| || ||||| | | Sbjct 53514 CAGGCATAAGTCCACGTTTTTTAAGCCAAAAAATTGCACAAAAGCTACCAGAAAATAGAA 53573 Query 13993 TTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATA 14052 |||| ||||| ||| || | || | || ||| |||| ||| || ||| | Sbjct 53574 TTCCTTCAACAGCACAGAATCCAATAATTCTTTCAGCAAAAGATCGTTCAGAATTC---A 53630 Query 14053 TCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAA 14112 ||||||| | |||||||| | ||| ||||||| | || || ||| || | || Sbjct 53631 TCCATTTAGTTGCCCATTCTGCTTTCTTTTTAACAGCTTCAATATGAGAAATTGCTTCAA 53690 Query 14113 ATA-AATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATT 14171 | | || | | | |||||| || | ||| ||| ||||||||||||| ||| || Sbjct 53691 AGAGCATTTGACGT-TCTTTAATATCAGTAATATATCTATCAATAAGTAATGAATAAGTT 53749 Query 14172 TCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCAT 14231 ||| ||||| | ||| |||| || |||||| ||||| | ||| ||||| | | Sbjct 53750 TCACTATGTATTTGTTCAATAGACATTTGAAAAGCATAATACATTCTGGCTTCTGGTATT 53809 Query 14232 TGTACTTC-CGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGC 14290 |||| ||| | | |||| || | || || ||||| |||| || |||||||| || || Sbjct 53810 TGTATTTCTCTAAGGAAAT-TTACTGCTAAGTTTTCCATAACAATGCCATCACTTGCAGC 53868 Query 14291 AAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCA---TTGTTGAGTTTTTTCCA 14347 ||| ||||| || | || ||| ||||| || || |||| | || || ||| ||| Sbjct 53869 AAAGAATGCTAAGACGTATTTGATAAA--ATGTCT-TTCAGGGTCTTTAAGACTTTCCCA 53925 Query 14348 ATC----GGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAG 14403 ||| | || |||||| |||| ||||| ||| |||||| || ||| Sbjct 53926 ATCTCTAGTATCTTGACTTAGATCAATCT-CTTCAGTAAC---CCAAAATGATGCTTCAG 53981 Query 14404 CTTTTTTATACATTACCCATATTTCTTTATATAAT 14438 |||||||||||||| ||| || |||||| |||| Sbjct 53982 CTTTTTTATACATTGACCAAATATCTTTAATTAAT 54016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479727286404600