Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001593465.1_202016-03- 17] 119 sequences; 9,107,739 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq102 199 9e-46 seq53 190 5e-43 seq88 183 7e-41 >seq102 Length=1270815 Score = 199 bits (220), Expect = 9e-46 Identities = 182/230 (79%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || ||||| || || | ||||| ||| || || || || ||||| ||||| ||||||||| Sbjct 544526 CCGCCTCTAAGTCTCAATACTAAATGCAAAGTGGACTCCTTCTGGATATTGTAGTCAGAT 544585 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 ||||||||||| ||||| | ||| ||||||||||| || || | ||||||||||||||| Sbjct 544586 AGAGTTCTACCATCTTCCAATTGCTTTCCAGCAAAGATCAGACGCTGTTGATCAGGAGGA 544645 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 || || || |||||||| |||||||| |||||||| || | |||||| |||||| || Sbjct 544646 ATGCCCTCCTTATCCTGGATCTTTGCCTTTACATTCTCAATAGTATCGGAAGGTTCAACT 544705 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 || | ||| || ||||| || || | ||||| ||||| || ||||| || Sbjct 544706 TCCAATGTGATGGTCTTTCCTGTTAAAGTTTTGACAAAAATTTGCATCTT 544755 >seq53 Length=978 Score = 190 bits (210), Expect = 5e-43 Identities = 180/230 (78%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| ||||| | ||||| |||||| ||||| ||||| ||||| || |||||| Sbjct 48 ATACCACCTCTGAGCCTCAATACTAAATGTAAAGTAGACTCTTTTTGAATGTTGTAGTCA 107 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||||||||| || |||| ||||||||| ||||| || | | ||||||||||| Sbjct 108 GAGAGAGTTCTACCATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGT 167 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || ||||| || ||||| ||||||||||| || ||||| || | ||||| |||||| Sbjct 168 GGGATTCCCTCCTTATCTTGAATCTTTGCCTTAACATTCTCAATTGTATCTGAAGGTTCA 227 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || | || |||||||| || || | || || ||||| |||||||| Sbjct 228 ACTTCCAAAGTGATAGTCTTTCCTGTCAAAGTCTTGACAAAAATCTGCAT 277 Score = 190 bits (210), Expect = 5e-43 Identities = 180/230 (78%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| ||||| | ||||| |||||| ||||| ||||| ||||| || |||||| Sbjct 504 ATACCACCTCTGAGCCTCAATACTAAATGTAAAGTAGACTCTTTTTGAATGTTGTAGTCA 563 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||||||||| || |||| ||||||||| ||||| || | | ||||||||||| Sbjct 564 GAGAGAGTTCTACCATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGT 623 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || ||||| || ||||| ||||||||||| || ||||| || | ||||| |||||| Sbjct 624 GGGATTCCCTCCTTATCTTGAATCTTTGCCTTAACATTCTCAATTGTATCTGAAGGTTCA 683 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || | || |||||||| || || | || || ||||| |||||||| Sbjct 684 ACTTCCAAAGTGATAGTCTTTCCTGTCAAAGTCTTGACAAAAATCTGCAT 733 Score = 172 bits (190), Expect = 1e-37 Identities = 176/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || || | |||| ||||| || || ||||| ||||| || || ||| Sbjct 276 ATACCACCTCTAAGTCTCAAGACTAAGTGTAAAGTGGACTCTTTTTGAATGTTGTAATCA 335 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||||||||| || |||| ||||||||| ||||| || | | ||||||||||| Sbjct 336 GAGAGAGTTCTACCATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGT 395 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || |||||||| ||||||||||||||||| || ||||| || | ||||| |||||| Sbjct 396 GGGATTCCTTCCTTATCCTGAATCTTTGCCTTAACATTCTCAATTGTATCTGAAGGTTCA 455 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || | || |||||||| || || | || || || || |||||||| Sbjct 456 ACTTCCAAAGTGATAGTCTTTCCTGTCAAAGTCTTAACGAAAATCTGCAT 505 Score = 172 bits (190), Expect = 1e-37 Identities = 176/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || || | |||| ||||| || || ||||| ||||| || || ||| Sbjct 732 ATACCACCTCTAAGTCTCAAGACTAAGTGTAAAGTGGACTCTTTTTGAATGTTGTAATCA 791 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||||||||| || |||| ||||||||| ||||| || | | ||||||||||| Sbjct 792 GAGAGAGTTCTACCATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGT 851 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || |||||||| ||||||||||||||||| || ||||| || | ||||| |||||| Sbjct 852 GGGATTCCTTCCTTATCCTGAATCTTTGCCTTAACATTCTCAATTGTATCTGAAGGTTCA 911 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || | || |||||||| || || | || || || || |||||||| Sbjct 912 ACTTCCAAAGTGATAGTCTTTCCTGTCAAAGTCTTAACGAAAATCTGCAT 961 >seq88 Length=50168 Score = 183 bits (202), Expect = 7e-41 Identities = 183/236 (78%), Gaps = 1/236 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| ||||| || || | |||| ||||| || || ||||| ||||| || || ||| Sbjct 13801 ATTCCGCCTCTAAGTCTCAAGACTAAGTGTAAAGTGGACTCTTTTTGAATGTTGTAATCA 13742 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||||||||| || |||| ||||||||| ||||| || | | ||||||||||| Sbjct 13741 GAGAGAGTTCTACCATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGT 13682 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || |||||||| ||||||||||||||||| || ||||| || | ||||| |||||| Sbjct 13681 GGGATTCCTTCCTTATCCTGAATCTTTGCCTTAACATTCTCAATTGTATCTGAAGGTTCA 13622 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT-TTTGT 104564 || || | || |||||||| || || | || || ||||| |||||||| ||||| Sbjct 13621 ACTTCCAAAGTGATAGTCTTTCCTGTCAAAGTCTTAACAAAAATCTGCATATTTGT 13566 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151396644477252