Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001593465.1_202016-03- 17] 119 sequences; 9,107,739 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq88 91.5 1e-13 seq53 86.0 5e-12 seq102 82.4 6e-11 >seq88 Length=50168 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 115282 AAAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTC 115341 ||| ||||| |||||||| || || | || ||||| || || || | ||| || | Sbjct 13568 AAATATGCAGATTTTTGTTAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTTGAACC 13627 Query 115342 CAGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGA 115401 || || ||| | || || ||| ||| ||||| ||||| |||| ||| Sbjct 13628 TTCAGATACAATTGAGAATGTTAAGGCAAAGATTCAGGATAAGGAAGGAATCCCACCTGA 13687 Query 115402 TCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTA 115461 ||| ||| | | || | ||| || ||||||||||| |||| | ||| | | ||||| Sbjct 13688 TCAACAACGTTTGATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTCTGATTA 13747 Query 115462 TAACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514 ||||||||||||||||| ||| |||| | || |||||| | |||| |||| Sbjct 13748 CAACATTCAAAAAGAGTCCACTTTACACTTAGTCTTGAGACTTAGAGGCGGAA 13800 >seq53 Length=978 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| ||||||||||| || | || ||||| || || || | ||| || | Sbjct 277 ATGCAGATTTTTGTCAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTTGAACCTTCA 218 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 || || ||| | || || ||| ||| ||||| || || |||| |||||| Sbjct 217 GATACAATTGAGAATGTTAAGGCAAAGATTCAAGATAAGGAGGGAATCCCACCTGATCAA 158 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 ||| | | || | ||| || ||||||||||| |||| | ||| | | || || ||| Sbjct 157 CAACGTTTGATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTCTGACTACAAC 98 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTGAG 115500 |||||||||||||||||| ||||| | || ||||| Sbjct 97 ATTCAAAAAGAGTCTACTTTACATTTAGTATTGAG 63 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| ||||||||||| || | || ||||| || || || | ||| || | Sbjct 733 ATGCAGATTTTTGTCAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTTGAACCTTCA 674 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 || || ||| | || || ||| ||| ||||| || || |||| |||||| Sbjct 673 GATACAATTGAGAATGTTAAGGCAAAGATTCAAGATAAGGAGGGAATCCCACCTGATCAA 614 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 ||| | | || | ||| || ||||||||||| |||| | ||| | | || || ||| Sbjct 613 CAACGTTTGATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTCTGACTACAAC 554 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTGAG 115500 |||||||||||||||||| ||||| | || ||||| Sbjct 553 ATTCAAAAAGAGTCTACTTTACATTTAGTATTGAG 519 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 115379 GATAAAGAAGGCGTCCCCGTTGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAA 115438 ||||| ||||| |||| |||||| ||| | | || | ||| || ||||||||||| Sbjct 412 GATAAGGAAGGAATCCCACCTGATCAACAACGTTTGATCTTTGCAGGAAAACAATTAGAG 353 Query 115439 GATGACAAAACCATGGCCGATTATAACATTCAAAAAGAGTCTACTATACATATGGTGTTG 115498 |||| | ||| | | ||||| ||||||||||||||||| ||| |||| | || ||| Sbjct 352 GATGGTAGAACTCTCTCTGATTACAACATTCAAAAAGAGTCCACTTTACACTTAGTCTTG 293 Query 115499 AGATTGCGAGGAGG 115512 ||| | |||| || Sbjct 292 AGACTTAGAGGTGG 279 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 115379 GATAAAGAAGGCGTCCCCGTTGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAA 115438 ||||| ||||| |||| |||||| ||| | | || | ||| || ||||||||||| Sbjct 868 GATAAGGAAGGAATCCCACCTGATCAACAACGTTTGATCTTTGCAGGAAAACAATTAGAG 809 Query 115439 GATGACAAAACCATGGCCGATTATAACATTCAAAAAGAGTCTACTATACATATGGTGTTG 115498 |||| | ||| | | ||||| ||||||||||||||||| ||| |||| | || ||| Sbjct 808 GATGGTAGAACTCTCTCTGATTACAACATTCAAAAAGAGTCCACTTTACACTTAGTCTTG 749 Query 115499 AGATTGCGAGGAGG 115512 ||| | |||| || Sbjct 748 AGACTTAGAGGTGG 735 >seq102 Length=1270815 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 115283 AAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCC 115342 || |||||||||||||||||||| | || ||||| ||||| || | ||| || | Sbjct 544755 AAGATGCAAATTTTTGTCAAAACTTTAACAGGAAAGACCATCACATTGGAAGTTGAACCT 544696 Query 115343 AGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 ||| ||| ||| | ||||| ||| || ||||| || ||| | || |||| Sbjct 544695 TCCGATACTATTGAGAATGTAAAGGCAAAGATCCAGGATAAGGAGGGCATTCCTCCTGAT 544636 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 || || | || || | ||| || || ||||| ||||||| | ||| | | || || Sbjct 544635 CAACAGCGTCTGATCTTTGCTGGAAAGCAATTGGAAGATGGTAGAACTCTATCTGACTAC 544576 Query 115463 AACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 || || || || ||||| ||| | ||| | || |||||| | |||| || Sbjct 544575 AATATCCAGAAGGAGTCCACTTTGCATTTAGTATTGAGACTTAGAGGCGG 544526 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425343383118280