Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001593465.1_202016-03- 17] 119 sequences; 9,107,739 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq53 141 2e-28 seq88 140 8e-28 seq102 127 5e-24 >seq53 Length=978 Score = 141 bits (156), Expect = 2e-28 Identities = 146/191 (76%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 |||||||| || || || || | ||| || | || || ||||||||||||||||| ||| Sbjct 315 TCTTTTTGAATGTTGTAATCAGAGAGAGTTCTACCATCCTCTAATTGTTTTCCTGCAAAG 374 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| ||| |||||| | |||||||||||| |||||||| || || || || || || Sbjct 375 ATCAAACGTTGTTGATCAGGTGGGATTCCTTCCTTATCCTGAATCTTTGCCTTAACATTC 434 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| | ||| ||||| | ||||| ||||| || |||| |||||| ||| Sbjct 435 TCAATTGTATCTGAAGGTTCAACTTCCAAAGTGATAGTCTTTCCTGTCAAAGTCTTAACG 494 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 495 AAAATCTGCAT 505 Score = 141 bits (156), Expect = 2e-28 Identities = 146/191 (76%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 |||||||| || || || || | ||| || | || || ||||||||||||||||| ||| Sbjct 771 TCTTTTTGAATGTTGTAATCAGAGAGAGTTCTACCATCCTCTAATTGTTTTCCTGCAAAG 830 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| ||| |||||| | |||||||||||| |||||||| || || || || || || Sbjct 831 ATCAAACGTTGTTGATCAGGTGGGATTCCTTCCTTATCCTGAATCTTTGCCTTAACATTC 890 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| | ||| ||||| | ||||| ||||| || |||| |||||| ||| Sbjct 891 TCAATTGTATCTGAAGGTTCAACTTCCAAAGTGATAGTCTTTCCTGTCAAAGTCTTAACG 950 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 951 AAAATCTGCAT 961 Score = 140 bits (154), Expect = 8e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | ||| || | ||| | ||| | || |||||||| || || ||||| | | Sbjct 51 CCACCTCTGAGCCTCAATACTAAATGTAAAGTAGACTCTTTTTGAATGTTGTAGTCAGAG 110 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || | || || ||||||||||||||||| ||||||| ||| |||||| | |||| Sbjct 111 AGAGTTCTACCATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGGG 170 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 ||||| || ||||| || || || || || || || || || | ||| | ||| ||| Sbjct 171 ATTCCCTCCTTATCTTGAATCTTTGCCTTAACATTCTCAATTGTATCTGAAGGTTCAACT 230 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || | ||||| ||||| || |||| ||||||||| || |||||||| Sbjct 231 TCCAAAGTGATAGTCTTTCCTGTCAAAGTCTTGACAAAAATCTGCAT 277 Score = 140 bits (154), Expect = 8e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | ||| || | ||| | ||| | || |||||||| || || ||||| | | Sbjct 507 CCACCTCTGAGCCTCAATACTAAATGTAAAGTAGACTCTTTTTGAATGTTGTAGTCAGAG 566 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || | || || ||||||||||||||||| ||||||| ||| |||||| | |||| Sbjct 567 AGAGTTCTACCATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGGG 626 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 ||||| || ||||| || || || || || || || || || | ||| | ||| ||| Sbjct 627 ATTCCCTCCTTATCTTGAATCTTTGCCTTAACATTCTCAATTGTATCTGAAGGTTCAACT 686 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || | ||||| ||||| || |||| ||||||||| || |||||||| Sbjct 687 TCCAAAGTGATAGTCTTTCCTGTCAAAGTCTTGACAAAAATCTGCAT 733 >seq88 Length=50168 Score = 140 bits (154), Expect = 8e-28 Identities = 152/202 (75%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 |||||||| || || || || | ||| || | || || ||||||||||||||||| ||| Sbjct 13762 TCTTTTTGAATGTTGTAATCAGAGAGAGTTCTACCATCCTCTAATTGTTTTCCTGCAAAG 13703 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| ||| |||||| | |||||||||||| |||||||| || || || || || || Sbjct 13702 ATCAAACGTTGTTGATCAGGTGGGATTCCTTCCTTATCCTGAATCTTTGCCTTAACATTC 13643 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| | ||| ||||| | ||||| ||||| || |||| |||||| || Sbjct 13642 TCAATTGTATCTGAAGGTTCAACTTCCAAAGTGATAGTCTTTCCTGTCAAAGTCTTAACA 13583 Query 288463 AATATCTGCATTATGTTATTCT 288484 || |||||||| | |||||| Sbjct 13582 AAAATCTGCATATTTGTATTCT 13561 >seq102 Length=1270815 Score = 127 bits (140), Expect = 5e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 288256 AGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGT 288315 ||||| | ||| | ||| | ||| || || |||||||| ||||| | || || | Sbjct 544535 AGTCTCAATACTAAATGCAAAGTGGACTCCTTCTGGATATTGTAGTCAGATAGAGTTCTA 544594 Query 288316 CCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCT 288375 || ||||| ||||| ||||| || |||||||||||||||||| | || || || || Sbjct 544595 CCATCTTCCAATTGCTTTCCAGCAAAGATCAGACGCTGTTGATCAGGAGGAATGCCCTCC 544654 Query 288376 TTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTG 288435 ||||||||||| || || || || || || |||| |||| | ||| ||||| | ||| Sbjct 544655 TTATCCTGGATCTTTGCCTTTACATTCTCAATAGTATCGGAAGGTTCAACTTCCAATGTG 544714 Query 288436 ATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| || || | ||| ||||| || || ||||| Sbjct 544715 ATGGTCTTTCCTGTTAAAGTTTTGACAAAAATTTGCAT 544752 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179652601395682