Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001593465.1_202016-03- 17] 119 sequences; 9,107,739 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq107 158 4e-33 seq101 114 4e-20 seq96 87.8 5e-12 >seq107 Length=246113 Score = 158 bits (174), Expect = 4e-33 Identities = 354/521 (68%), Gaps = 17/521 (3%) Strand=Plus/Minus Query 288848 TCCTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTG 288907 |||||||||| || || | ||| |||||||| || ||||||| ||| | | |||||| Sbjct 30613 TCCTATCAAATCTTCCTGGACGTGTTAATGCAGGATCTAATACATCAGAACGATTTGTTC 30554 Query 288908 CTGCCAATACAACAA-TAGATTCGGTTTGCTTAAATCCATCCATACTTGTTAAAATTTGA 288966 |||| || || | | | ||| ||| ||||||||||||| | | ||| ||| Sbjct 30553 CTGCTAAAACTATTACTCCATTAT-TTTCAGTAAATCCATCCATTTCTACAAGAATCTGA 30495 Query 288967 TTAAGTGTTTGTTCCCTTTCATCATT---TGAACCTCTTGAATCACCCGAATC-GCTCCt 289022 ||||| || ||| || |||||||| |||| | | ||||| | || | Sbjct 30494 TTAAGAGTGCTTTCTCTCTCATCATTAGATGAAGCAGCAAATCCACCCCCTTTTGCACGC 30435 Query 289023 ttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGC 289082 ||| || ||||| ||||||||||| ||||| |||| | || ||||| || ||| || Sbjct 30434 TTTCTT-CCAACTGCATCAATTTCATCAATAAAAACAATACTTGGAGATAATTTTCTTGC 30376 Query 289083 AATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTC 289142 || ||||||||||||||| | ||| || | |||||| | || || | ||| || Sbjct 30375 CTGTGAAAATAATTCTCTTACTCTACTTGCACCCATTCCAACAAAAATCTCAATAAAATC 30316 Query 289143 AGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAG 289202 | | |||| | || |||| |||||| ||||| || || || || | || | | Sbjct 30315 ACTTCCAGATATATAAAAAAATGGTACATTAGCTTCACCAGCAACAGCTTTTGCTAATAA 30256 Query 289203 TGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGC 289262 ||| ||||| || || |||||||| | |||| | | || ||||||| |||||| ||| Sbjct 30255 TGTTTTACCGGTACCTGGTGGTCCTACCAATAAAGCACCTTTTGGTATTTTTGCACCA-- 30198 Query 289263 AGA-CTT---ATATTTCTCAGGGCTC-TTTAAAAATTCTACAATTTCCTCAAGTTCATAT 289317 ||| ||| || ||| | || || ||||| |||||||| | ||| | | ||| | | Sbjct 30197 AGATCTTGAAATCTTTTT---GGATCTTTTAAGAATTCTACCAATTCATATATTTCTTGT 30141 Query 289318 TTTGCCTCATCACATCCTGCTACATCAGCAAAAGTAATATT 289358 || || || | ||| || | |||| ||| ||||||| Sbjct 30140 TTGGCTTCTTTCATTCCAGCAATATCACTAAATTTAATATT 30100 >seq101 Length=510706 Score = 114 bits (126), Expect = 4e-20 Identities = 776/1233 (63%), Gaps = 56/1233 (5%) Strand=Plus/Minus Query 155313 TCCAGAGCCGCAAAATAAATTGTCTCAAAGATATATTTATTGACTGTTTTAGCCTCCTCA 155372 || ||||| ||| |||| || |||||||| | |||||| | | ||||| ||||| Sbjct 331651 TCGAGAGCTGCATAATAGATAACTTCAAAGATTTGTTTATTTAACTTCTTAGCTCCCTCA 331592 Query 155373 GATGTAAATGCGATATC---CATCTTGAAAAATGTGTCGGCTAAACCCTGAACTCCAATA 155429 || ||| ||| |||| ||||| | ||| || | || |||| ||||| Sbjct 331591 GACTCGTATGGCATACGAAGCATCATGAAACA---GTCTGCGAGCCCTTGAATGCCAATC 331535 Query 155430 CCGACTGGGCGATGCCTGTAATTGCTCCTGCTTGTC--TTCTTGTTTGGGTAAAAATTC- 155486 || | ||| ||||| || |||| | | |||| ||||| | | | | || || Sbjct 331534 CCCAATGGACGATGTCTTAAATT---CGAGTTTGTACATTCTT-TAAGAGAATAATATCC 331479 Query 155487 -ACATCAATAATGTTATTTAAATTT---GTAACCAATACCTTGGTTACGTCTGCTAATTT 155542 || ||||| | ||||| ||||| |||| || |||| || || ||| ||| || Sbjct 331478 AACGTCAATCAATTTATTCAAATTCCTCGTAATCA---CCTTCGTAACTTCTTTTAACTT 331422 Query 155543 CACATAGTCAAATGTTTT---ATCCTCATTTACAAACATACCAAGACCAATAGACGCCAG 155599 || | ||||| || || || | || || ||| | ||| |||||||||||||| Sbjct 331421 ATCAAAATCAAACGTCTTGTTATTTTTATCAACGAACTTTGGAAGGCCAATAGACGCCAG 331362 Query 155600 ATTACATACCGCAGTCTCCTTGTCGTCGCT---GTATTCTACAATCTCACAGCACAGGTT 155656 |||||| || ||| || ||| | ||| |||||||| || || ||| | ||| Sbjct 331361 ATTACAAACGGCAACTTC---GTCCTTGCTAGTGTATTCTATGATTTCTGTGCATAAGTT 331305 Query 155657 AGAACTCTTGA-----TGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCATCC 155711 | ||||| | || || ||||| ||||||||| ||| || || |||||| Sbjct 331304 A-----CTTGAAACAATAGTTCCCAAATTTTTCTGGTTACTTTTGCTATTTGCAGCATCT 331250 Query 155712 TTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAGCCAGAGG 155771 || || ||| |||| || || ||||| || || || | | || | ||| || Sbjct 331249 TTATAACAAATAAATGGTGTCCCCGTCTCAATTTGAGCCTGTAAGATTAAGAACCAAAGT 331190 Query 155772 TCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGACTCATATT--TCATATACAGCG 155829 | | || || || || | | ||||| |||||| | ||||||| || Sbjct 331189 TTCTGCGCTTTCATCGTTTTCCTTCCACGGCCTTGTTTCTCATACTCTTCATATA--GCT 331132 Query 155830 TTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCAAAACAGCG 155889 | |||| || || || ||| || ||| ||| | ||| ||||| | || | Sbjct 331131 TCTTAAAATCATCGCCCCAAACATCTTGCAATCCCCTGCATTCATCTGGGCACATTAGAG 331072 Query 155890 ACCAAATTTTATTACCGATTACACGCT--CCATAAATACATCACTCGCCCAAATAGCATA 155947 |||| || || || | || || |||| || | |||| |||||| ||| Sbjct 331071 TCCAATCTTGAT--CCTTCTCAACTCTTTCCATGAACAGATCAGGAACCCAAAGGGCAGG 331014 Query 155948 GAAAAGGTCCCTTGCCTTTGA-CTCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGAATT 156006 || || || | | | | | ||| || | || |||||||||| | || | || | Sbjct 331013 AAAGAGATCGCGA-CATCTCATCTCTTCCTTTCCATGATTCTTCCTAATTTCAATAAACT 330955 Query 156007 CCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCCTCTTGCC-- 156064 | ||| |||| || ||| |||| ||| || |||| ||| || | ||| || Sbjct 330954 CTACAACATCAACGTGCCATGGTTCCAAATAAATTGCAATGGCACCTTTACGCTTCCCTC 330895 Query 156065 -ACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCAT 156123 ||| ||||| | ||||| |||||| | ||| | || | ||||| ||||| | |||| Sbjct 330894 CACCTTGATCAATATACCTAGCAGTGTCATTATAAACGCGCAGCATCGGAATTAATCCAT 330835 Query 156124 TGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATATGTA 156183 | || | ||||| ||||| ||||||| ||||||| | | || |||| | | Sbjct 330834 TAGATCTCCCATTTGTTCCTCGAATATATGAACCAGTTCCTCTAATATTACTTACTGCCA 330775 Query 156184 GTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATAC 156243 |||| ||||||| ||| ||| | ||||||| ||| || | || |||| Sbjct 330774 CCCCAAGGCCACCTGCAGTCTTACTAATGTTTGCGCATTTAGTTAGTGTGTCAAAGATAC 330715 Query 156244 CTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTG 156303 | | || ||||| ||| || |||| | | || || | ||||||||| || | Sbjct 330714 CGTTTATTGAATCTTCTGGAATCCTGAGTAAAAAACAAGATGACATTTGAGGTCGCGGCG 330655 Query 156304 TTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGACATATAATCGT 156363 | || | || || ||||| |||||||||||| ||||||| || | || | | || | Sbjct 330654 TGCCTGAATTAAAGAGTGTGGGTGTTGCATGAGTAAAATATTTTTGCGATAACAACTCAT 330595 Query 156364 ATGTCTC--CTTAATCTTCTCAAGATTAGACCCGTGAATACAGATAGAGACCCTCATCCA 156421 |||| || | | || |||| || | | ||||||| ||| |||| |||| Sbjct 330594 ATGTTTCAAGTGCAGCT--TCAATATCACCACAATGAATACCACAAGAAACCCGCATCAG 330537 Query 156422 CATATGCTGAGGACGCTCTACAATCACTCCATCAATTCGCAGAAGGTATGCGCGTTCCAG 156481 | ||| || || | || |||| |||||| ||||| || | | ||| || Sbjct 330536 AAGATGTTGTGGTCTTTCCACAACTTTGTTGTCAATTTTAAGAAGATAGGATCTTTCTAG 330477 Query 156482 AGTTTTAAACCCGAAATAATCAAACAGAAAATC 156514 |||||| || | ||||||||| | |||||| Sbjct 330476 AGTTTTGAAGGCAAAATAATCATATTCAAAATC 330444 Score = 105 bits (116), Expect = 2e-17 Identities = 282/426 (66%), Gaps = 14/426 (3%) Strand=Plus/Minus Query 154535 CAGATAATAAATACCTGTCTTTAGCCCTGCCCGCCAACCATAGAAATGCATATTTGTTAA 154594 || ||||||||| ||||| ||||| ||| ||||||||| ||||||||| || ||| Sbjct 332249 CAAATAATAAATGCCTGTTTTTAGACCTTTTTTCCAACCATAAAAATGCATAGATGATAA 332190 Query 154595 TGATTTAGGCTCTGGGTCTTCCATCCATAAATTCATACTCTGCGATTGGCAAATATATAA 154654 | | | | | |||||| | |||| | |||||||| |||| |||| Sbjct 332189 CTTTGCAAAGTTAGCATTTTCCATATGGATGTTCAAAGATTGCGATTGACAAACATATGG 332130 Query 154655 TCCGCGGTCACGAGCCATATCAATTAGTGTCTTCATTTTAATTTCCCATACAATCTTGTA 154714 || | || |||||||||||||| |||||| || |||||||||||| |||| || Sbjct 332129 ACCCCTATCTGCAGCCATATCAATTACTGTCTTTTGCTTGATTTCCCATACAGTCTTATA 332070 Query 154715 TTTCTCTTTAATATGTTCTGGTAGTCCATCAATATATTGAACGCTTCCCTTGTTGGCAAT 154774 ||| |||| || || | | | |||| ||||| || || || || ||||| Sbjct 332069 AAGCTCACGTATATCCTCCGGAATTGTAAGTATATTTTGAATACTGCCATTATTTGCAAT 332010 Query 154775 AATATTGTTCTTGACGCTTTCATCCCATAGTTTTAGTGCCAGTAGTTCATCGACCAGAT- 154833 |||||| | ||| | || |||||||||| || | |||| |||| | || | Sbjct 332009 AATATTCTGCTTAAGCCTATCATCCCATAACCCAAGCTCTAGTAAATCATTTAGCAAGTG 331950 Query 154834 ---ATTTATTAACCATCGTAAATTCACCCGCCAGAGTTTTCCT--GCTG-TAAATATTAC 154887 ||||| || || | || ||||| | || | ||| | || ||||| || Sbjct 331949 CGGATTTACTA--CAAAG--AACTCACCAGATAG---TACCCTACGATGATAAATGTTCG 331897 Query 154888 TTGTAATTGGCTCAAAGCACTCGTTATTACCTAAAATCTGGCTTGTGCTTGCTGTAGGCA 154947 || | ||||||||| | ||| || ||||||||||| || ||| |||||| |||| Sbjct 331896 AGGTGAATGGCTCAAAACTCTCATTGTTACCTAAAATTTGTGAAGTGGATGCTGTTGGCA 331837 Query 154948 TGGGAG 154953 | |||| Sbjct 331836 TTGGAG 331831 Score = 84.2 bits (92), Expect = 6e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 448899 GAAATCAAGAAGGCATATAAACGACTCGCAATTAAACATCATCCTGATAAAAATCCAGAT 448958 ||||| | |||| |||||| | | | ||| | ||| |||||||||||||| || ||| Sbjct 499662 GAAATAAGGAAGTCATATAGAAAATTAGCATTAAAATGGCATCCTGATAAAAACCCTGAT 499603 Query 448959 AATAAAGCAGAGGCAGAGGAGAAATTCAAAGAGATTTCTCAAGCTTATGAAATT 449012 |||| || ||| || ||||||| |||||| ||||| | ||||||| ||| || Sbjct 499602 AATAGAGAAGAAGCTGAGGAGATGTTCAAAAAGATTGCAGAAGCTTACGAAGTT 499549 >seq96 Length=249867 Score = 87.8 bits (96), Expect = 5e-12 Identities = 235/355 (66%), Gaps = 6/355 (2%) Strand=Plus/Plus Query 302494 ATTCCGTCATCGCCGTA--GGAATACTGAATGATTTTGTTCTTGTTATTTCTTACGGTCA 302551 ||||| || || || || ||||| ||||| || | | || |||| || || || Sbjct 175437 ATTCCATCTTCTCCATAAAGGAAT--TGAATAATATCGCCATTACTATTCCTAACAGTTC 175494 Query 302552 TATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAG 302611 ||||||| | |||| |||||||| ||| |||| | | || ||||| || | Sbjct 175495 TATCATATTGCACCATACAATCTTCCATTGCCTTTATTAGCCTTCTTTGTATATACCCTG 175554 Query 302612 TTGTAGATGTTTTTACA-GCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAG 302670 || || ||||| ||| || |||||||| | || | | || ||||||||||| || Sbjct 175555 TTTCTGAAGTTTT-ACACGCAGTATCAATGATTCCTTCTCTGCCTCCCATAGCATGAAAA 175613 Query 302671 AATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCG 302730 || | || | ||| || || || | | ||| || ||| |||||||| || Sbjct 175614 AAAACTTCCTGGGGTGTAAGACCTGAAAGATATGAGTTCGAAACAAAACCACGACTTTCA 175673 Query 302731 GGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATA 302790 ||| || || | || ||||||||||| | | || | | | | || |||| || Sbjct 175674 GGCCCATAATCATATTTCAAAAAGTGTGGCAAGCTTCTATCCCTAAATCCAAATGGAATG 175733 Query 302791 CGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTA 302845 || || || ||||| || |||||||| | ||| | || ||||| |||||||||| Sbjct 175734 CGTTTACCTTCAACATTTTGCTGTCCAACGCATGCCATAATCTGTGAAATATTTA 175788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471815355938103