Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001593465.1_202016-03- 17] 119 sequences; 9,107,739 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq88 111 1e-19 seq53 111 1e-19 >seq88 Length=50168 Score = 111 bits (122), Expect = 1e-19 Identities = 157/218 (72%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 33538 AACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCG 33597 || || || |||| |||| ||||||||| ||||||||||| ||||| || | | || Sbjct 13783 AAGACTAAGTGTAAAGTGGACTCTTTTTGAATGTTGTAATCAGAGAGAGTTCTACCATCC 13724 Query 33598 TCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCG 33657 || ||||||||||| ||||| |||||||| || ||||| | || | ||||| || || Sbjct 13723 TCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGGGATTCCTTCCTTATCC 13664 Query 33658 GCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGT 33716 ||| || || | ||||| || | || || | ||| || || | ||||| || Sbjct 13663 TGAATCTT-TGCCTTAACATTCTCAATTGTATCTGAAGGTTCAACTTCCAAAGTGATAGT 13605 Query 33717 TTTACCTGTTAACGTTTTTACAAAGATCTGCATAGTTG 33754 || ||||| || || || ||||| ||||||||| ||| Sbjct 13604 CTTTCCTGTCAAAGTCTTAACAAAAATCTGCATATTTG 13567 >seq53 Length=978 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||| | | || || || |||| |||| ||||||||| ||||||||||| || Sbjct 278 ACCACCTCTAAGTCTCAAGACTAAGTGTAAAGTGGACTCTTTTTGAATGTTGTAATCAGA 337 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| || | | || || ||||||||||| ||||| |||||||| || ||||| | || Sbjct 338 GAGAGTTCTACCATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGG 397 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||| || || ||| || || | ||||| || | || || | ||| | Sbjct 398 GATTCCTTCCTTATCCTGAATCTT-TGCCTTAACATTCTCAATTGTATCTGAAGGTTCAA 456 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| || || ||||| || || || || || ||||||||| Sbjct 457 CTTCCAAAGTGATAGTCTTTCCTGTCAAAGTCTTAACGAAAATCTGCATA 506 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||| | | || || || |||| |||| ||||||||| ||||||||||| || Sbjct 734 ACCACCTCTAAGTCTCAAGACTAAGTGTAAAGTGGACTCTTTTTGAATGTTGTAATCAGA 793 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| || | | || || ||||||||||| ||||| |||||||| || ||||| | || Sbjct 794 GAGAGTTCTACCATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGG 853 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||| || || ||| || || | ||||| || | || || | ||| | Sbjct 854 GATTCCTTCCTTATCCTGAATCTT-TGCCTTAACATTCTCAATTGTATCTGAAGGTTCAA 912 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| || || ||||| || || || || || ||||||||| Sbjct 913 CTTCCAAAGTGATAGTCTTTCCTGTCAAAGTCTTAACGAAAATCTGCATA 962 Score = 105 bits (116), Expect = 4e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||| | | || || ||||||| ||| ||||||||| |||||||| || || Sbjct 50 ACCACCTCTGAGCCTCAATACTAAATGTAAAGTAGACTCTTTTTGAATGTTGTAGTCAGA 109 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| || | | || || ||||||||||| ||||| |||||||| || ||||| | || Sbjct 110 GAGAGTTCTACCATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGG 169 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | || || || || ||| || || | ||||| || | || || | ||| | Sbjct 170 GATTCCCTCCTTATCTTGAATCTT-TGCCTTAACATTCTCAATTGTATCTGAAGGTTCAA 228 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| || || ||||| || || || ||||| ||||||||| Sbjct 229 CTTCCAAAGTGATAGTCTTTCCTGTCAAAGTCTTGACAAAAATCTGCATA 278 Score = 105 bits (116), Expect = 4e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||| | | || || ||||||| ||| ||||||||| |||||||| || || Sbjct 506 ACCACCTCTGAGCCTCAATACTAAATGTAAAGTAGACTCTTTTTGAATGTTGTAGTCAGA 565 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| || | | || || ||||||||||| ||||| |||||||| || ||||| | || Sbjct 566 GAGAGTTCTACCATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGG 625 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | || || || || ||| || || | ||||| || | || || | ||| | Sbjct 626 GATTCCCTCCTTATCTTGAATCTT-TGCCTTAACATTCTCAATTGTATCTGAAGGTTCAA 684 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| || || ||||| || || || ||||| ||||||||| Sbjct 685 CTTCCAAAGTGATAGTCTTTCCTGTCAAAGTCTTGACAAAAATCTGCATA 734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328703523276480