Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001593465.1_202016-03- 17] 119 sequences; 9,107,739 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq88 116 9e-21 seq53 114 3e-20 seq102 113 1e-19 >seq88 Length=50168 Score = 116 bits (128), Expect = 9e-21 Identities = 157/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || | |||||||| || |||||||||||||| ||| ||| || Sbjct 13575 CAGATTTTTGTTAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTTGAACCTTCAGAT 13634 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 ||| | || || ||| ||||||||| || || |||||||| || || ||| Sbjct 13635 ACAATTGAGAATGTTAAGGCAAAGATTCAGGATAAGGAAGGAATCCCACCTGATCAACAA 13694 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | ||||| || ||||| || || || ||||| || ||| | | ||||||||| | Sbjct 13695 CGTTTGATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTCTGATTACAACATT 13754 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 206391 || |||||||| ||| | ||| | || ||||||||| || Sbjct 13755 CAAAAAGAGTCCACTTTACACTTAGTCTTGAGACTTAGA 13793 >seq53 Length=978 Score = 114 bits (126), Expect = 3e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 |||||||| || |||||||||||||| ||| ||| || ||| | || || ||| | Sbjct 481 ACAGGAAAGACTATCACTTTGGAAGTTGAACCTTCAGATACAATTGAGAATGTTAAGGCA 422 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 |||||||| || || |||||||| || || ||| | | ||||| || ||||| Sbjct 421 AAGATTCAGGATAAGGAAGGAATCCCACCTGATCAACAACGTTTGATCTTTGCAGGAAAA 362 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 || || || ||||| || ||| | | ||||||||| | || |||||||| ||| | ||| Sbjct 361 CAATTAGAGGATGGTAGAACTCTCTCTGATTACAACATTCAAAAAGAGTCCACTTTACAC 302 Query 206374 CTTGTTTTGAGACTTCGA 206391 | || ||||||||| || Sbjct 301 TTAGTCTTGAGACTTAGA 284 Score = 114 bits (126), Expect = 3e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 |||||||| || |||||||||||||| ||| ||| || ||| | || || ||| | Sbjct 937 ACAGGAAAGACTATCACTTTGGAAGTTGAACCTTCAGATACAATTGAGAATGTTAAGGCA 878 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 |||||||| || || |||||||| || || ||| | | ||||| || ||||| Sbjct 877 AAGATTCAGGATAAGGAAGGAATCCCACCTGATCAACAACGTTTGATCTTTGCAGGAAAA 818 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 || || || ||||| || ||| | | ||||||||| | || |||||||| ||| | ||| Sbjct 817 CAATTAGAGGATGGTAGAACTCTCTCTGATTACAACATTCAAAAAGAGTCCACTTTACAC 758 Query 206374 CTTGTTTTGAGACTTCGA 206391 | || ||||||||| || Sbjct 757 TTAGTCTTGAGACTTAGA 740 Score = 109 bits (120), Expect = 1e-18 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || | |||||||| || |||||||||||||| ||| ||| || Sbjct 274 CAGATTTTTGTCAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTTGAACCTTCAGAT 215 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 ||| | || || ||| |||||||||||| || || ||||| || || ||| Sbjct 214 ACAATTGAGAATGTTAAGGCAAAGATTCAAGATAAGGAGGGAATCCCACCTGATCAACAA 155 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | ||||| || ||||| || || || ||||| || ||| | | || |||||| | Sbjct 154 CGTTTGATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTCTGACTACAACATT 95 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACT 206387 || |||||||||||| | || | || ||||| || Sbjct 94 CAAAAAGAGTCTACTTTACATTTAGTATTGAGGCT 60 Score = 109 bits (120), Expect = 1e-18 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || | |||||||| || |||||||||||||| ||| ||| || Sbjct 730 CAGATTTTTGTCAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTTGAACCTTCAGAT 671 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 ||| | || || ||| |||||||||||| || || ||||| || || ||| Sbjct 670 ACAATTGAGAATGTTAAGGCAAAGATTCAAGATAAGGAGGGAATCCCACCTGATCAACAA 611 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | ||||| || ||||| || || || ||||| || ||| | | || |||||| | Sbjct 610 CGTTTGATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTCTGACTACAACATT 551 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACT 206387 || |||||||||||| | || | || ||||| || Sbjct 550 CAAAAAGAGTCTACTTTACATTTAGTATTGAGGCT 516 >seq102 Length=1270815 Score = 113 bits (124), Expect = 1e-19 Identities = 154/214 (72%), Gaps = 1/214 (0%) Strand=Plus/Minus Query 206179 TTTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGT 206237 ||||| |||||| | |||||||| || ||||| |||||||| ||| ||| || || | Sbjct 544744 TTTTGTCAAAACTTTAACAGGAAAGACCATCACATTGGAAGTTGAACCTTCCGATACTAT 544685 Query 206238 CGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACT 206297 || |||||| |||||| || || || || || ||| || || || | || Sbjct 544684 TGAGAATGTAAAGGCAAAGATCCAGGATAAGGAGGGCATTCCTCCTGATCAACAGCGTCT 544625 Query 206298 TATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAA 206357 ||||| || |||||||| ||||||||||| || ||| | | || ||||| ||||||| Sbjct 544624 GATCTTTGCTGGAAAGCAATTGGAAGATGGTAGAACTCTATCTGACTACAATATCCAGAA 544565 Query 206358 AGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 206391 ||||| ||| | || | || ||||||||| || Sbjct 544564 GGAGTCCACTTTGCATTTAGTATTGAGACTTAGA 544531 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181818998092599