Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001593465.1_202016-03- 17] 119 sequences; 9,107,739 total letters Query= NC_026430.1 Length=125767 Score E Sequences producing significant alignments: (Bits) Value seq88 109 4e-19 seq53 107 2e-18 seq102 96.9 3e-15 >seq88 Length=50168 Score = 109 bits (120), Expect = 4e-19 Identities = 168/240 (70%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 106248 AAGAGTTTAAAAATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAA 106307 |||| | ||| ||||| ||||||||||| || ||||| || ||||| || || ||||| Sbjct 13560 AAGAATACAAATATGCAGATTTTTGTTAAGACTTTGACAGGAAAGACTATCACTTTGGAA 13619 Query 106308 ACAGAACCCGGCGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTG 106367 ||||| ||| | ||| | || || ||| ||| || || ||||| | Sbjct 13620 GTTGAACCTTCAGATACAATTGAGAATGTTAAGGCAAAGATTCAGGATAAGGAAGGAATC 13679 Query 106368 CCCGTTGATCAACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATG 106427 || |||||||||| | | || | ||| || ||||||||||| ||| || |||| | Sbjct 13680 CCACCTGATCAACAACGTTTGATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTC 13739 Query 106428 GGCGATTACAACATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGGA 106487 ||||||||||| |||||||| || || |||| ||||| ||||| | |||| ||| Sbjct 13740 TCTGATTACAACATTCAAAAAGAGTCCACTTTACACTTAGTCTTGAGACTTAGAGGCGGA 13799 >seq53 Length=978 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| |||||||| || || ||||| || ||||| || || ||||| ||||| Sbjct 277 ATGCAGATTTTTGTCAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTTGAACCTTCA 218 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| | ||| | || || ||| ||| || || || || | || ||||||| Sbjct 217 GATACAATTGAGAATGTTAAGGCAAAGATTCAAGATAAGGAGGGAATCCCACCTGATCAA 158 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||| | | || | ||| || ||||||||||| ||| || |||| | || |||||| Sbjct 157 CAACGTTTGATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTCTGACTACAAC 98 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 || |||||||| ||||| ||||||||||||||||| | |||| || Sbjct 97 ATTCAAAAAGAGTCTACTTTACATTTAGTATTGAGGCTCAGAGGTGG 51 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| |||||||| || || ||||| || ||||| || || ||||| ||||| Sbjct 733 ATGCAGATTTTTGTCAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTTGAACCTTCA 674 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| | ||| | || || ||| ||| || || || || | || ||||||| Sbjct 673 GATACAATTGAGAATGTTAAGGCAAAGATTCAAGATAAGGAGGGAATCCCACCTGATCAA 614 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||| | | || | ||| || ||||||||||| ||| || |||| | || |||||| Sbjct 613 CAACGTTTGATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTCTGACTACAAC 554 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 || |||||||| ||||| ||||||||||||||||| | |||| || Sbjct 553 ATTCAAAAAGAGTCTACTTTACATTTAGTATTGAGGCTCAGAGGTGG 507 Score = 100 bits (110), Expect = 2e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| ||||| ||||| || ||||| || ||||| || || ||||| ||||| Sbjct 505 ATGCAGATTTTCGTTAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTTGAACCTTCA 446 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| | ||| | || || ||| ||| || || ||||| | || ||||||| Sbjct 445 GATACAATTGAGAATGTTAAGGCAAAGATTCAGGATAAGGAAGGAATCCCACCTGATCAA 386 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||| | | || | ||| || ||||||||||| ||| || |||| | ||||||||| Sbjct 385 CAACGTTTGATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTCTGATTACAAC 326 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAG 106474 || |||||||| || || |||| ||||| ||||| Sbjct 325 ATTCAAAAAGAGTCCACTTTACACTTAGTCTTGAG 291 Score = 100 bits (110), Expect = 2e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| ||||| ||||| || ||||| || ||||| || || ||||| ||||| Sbjct 961 ATGCAGATTTTCGTTAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTTGAACCTTCA 902 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| | ||| | || || ||| ||| || || ||||| | || ||||||| Sbjct 901 GATACAATTGAGAATGTTAAGGCAAAGATTCAGGATAAGGAAGGAATCCCACCTGATCAA 842 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||| | | || | ||| || ||||||||||| ||| || |||| | ||||||||| Sbjct 841 CAACGTTTGATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTCTGATTACAAC 782 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAG 106474 || |||||||| || || |||| ||||| ||||| Sbjct 781 ATTCAAAAAGAGTCCACTTTACACTTAGTCTTGAG 747 >seq102 Length=1270815 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 106257 AAAATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCC 106316 || |||||||||||||| ||||| || || || |||||||| || ||||| ||||| Sbjct 544755 AAGATGCAAATTTTTGTCAAAACTTTAACAGGAAAGACCATCACATTGGAAGTTGAACCT 544696 Query 106317 GGCGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGAT 106376 |||| || ||| | || || ||| || || || || ||| | || |||| Sbjct 544695 TCCGATACTATTGAGAATGTAAAGGCAAAGATCCAGGATAAGGAGGGCATTCCTCCTGAT 544636 Query 106377 CAACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTAC 106436 ||||| | || || | ||| || || ||||| |||||| || |||| | || ||| Sbjct 544635 CAACAGCGTCTGATCTTTGCTGGAAAGCAATTGGAAGATGGTAGAACTCTATCTGACTAC 544576 Query 106437 AACATACAAAAAGAATCTACACTACATTTAGTATTGAG 106474 || || || || || || || | |||||||||||||| Sbjct 544575 AATATCCAGAAGGAGTCCACTTTGCATTTAGTATTGAG 544538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 402329016496352