Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001593465.1_202016-03- 17] 119 sequences; 9,107,739 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq88 158 3e-33 seq53 152 1e-31 seq102 134 3e-26 >seq88 Length=50168 Score = 158 bits (174), Expect = 3e-33 Identities = 168/222 (76%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210896 AAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCT 210955 |||||| | ||| | ||| | ||||||||||||||| ||||| ||||| | || || || Sbjct 13790 AAGTCTCAAGACTAAGTGTAAAGTGGACTCTTTTTGAATGTTGTAATCAGAGAGAGTTCT 13731 Query 210956 TCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTC 211015 ||||| || | || || ||||| ||||| | |||||||| ||||| || | |||||| Sbjct 13730 ACCATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGGGATTCCTTC 13671 Query 211016 CTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGT 211075 ||| ||||| |||||| || || || || || || || || |||||| || | ||| Sbjct 13670 CTTATCCTGAATCTTTGCCTTAACATTCTCAATTGTATCTGAAGGTTCAACTTCCAAAGT 13611 Query 211076 GATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 ||| |||||||| || | |||||| ||||| | |||||| || Sbjct 13610 GATAGTCTTTCCTGTCAAAGTCTTAACAAAAATCTGCATATT 13569 >seq53 Length=978 Score = 152 bits (168), Expect = 1e-31 Identities = 165/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 210896 AAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCT 210955 |||||| | ||| | ||| | ||||||||||||||| ||||| ||||| | || || || Sbjct 287 AAGTCTCAAGACTAAGTGTAAAGTGGACTCTTTTTGAATGTTGTAATCAGAGAGAGTTCT 346 Query 210956 TCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTC 211015 ||||| || | || || ||||| ||||| | |||||||| ||||| || | |||||| Sbjct 347 ACCATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGGGATTCCTTC 406 Query 211016 CTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGT 211075 ||| ||||| |||||| || || || || || || || || |||||| || | ||| Sbjct 407 CTTATCCTGAATCTTTGCCTTAACATTCTCAATTGTATCTGAAGGTTCAACTTCCAAAGT 466 Query 211076 GATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||| |||||||| || | |||||| || || | |||||| Sbjct 467 GATAGTCTTTCCTGTCAAAGTCTTAACGAAAATCTGCAT 505 Score = 152 bits (168), Expect = 1e-31 Identities = 165/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 210896 AAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCT 210955 |||||| | ||| | ||| | ||||||||||||||| ||||| ||||| | || || || Sbjct 743 AAGTCTCAAGACTAAGTGTAAAGTGGACTCTTTTTGAATGTTGTAATCAGAGAGAGTTCT 802 Query 210956 TCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTC 211015 ||||| || | || || ||||| ||||| | |||||||| ||||| || | |||||| Sbjct 803 ACCATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGGGATTCCTTC 862 Query 211016 CTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGT 211075 ||| ||||| |||||| || || || || || || || || |||||| || | ||| Sbjct 863 CTTATCCTGAATCTTTGCCTTAACATTCTCAATTGTATCTGAAGGTTCAACTTCCAAAGT 922 Query 211076 GATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||| |||||||| || | |||||| || || | |||||| Sbjct 923 GATAGTCTTTCCTGTCAAAGTCTTAACGAAAATCTGCAT 961 Score = 127 bits (140), Expect = 5e-24 Identities = 147/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 210917 AGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCC 210976 ||| ||||||||||| ||||| || || | || || || ||||| || | || || || Sbjct 80 AGTAGACTCTTTTTGAATGTTGTAGTCAGAGAGAGTTCTACCATCCTCTAATTGTTTTCC 139 Query 210977 TGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTT 211036 ||| ||||| | |||||||| ||||| || | ||| ||||| || || |||||| || Sbjct 140 TGCAAAGATCAAACGTTGTTGATCAGGTGGGATTCCCTCCTTATCTTGAATCTTTGCCTT 199 Query 211037 CACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGT 211096 || || || || || || || |||||| || | |||||| |||||||| || | ||| Sbjct 200 AACATTCTCAATTGTATCTGAAGGTTCAACTTCCAAAGTGATAGTCTTTCCTGTCAAAGT 259 Query 211097 CTTTACAAACACCTGCAT 211114 ||| ||||| | |||||| Sbjct 260 CTTGACAAAAATCTGCAT 277 Score = 127 bits (140), Expect = 5e-24 Identities = 147/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 210917 AGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCC 210976 ||| ||||||||||| ||||| || || | || || || ||||| || | || || || Sbjct 536 AGTAGACTCTTTTTGAATGTTGTAGTCAGAGAGAGTTCTACCATCCTCTAATTGTTTTCC 595 Query 210977 TGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTT 211036 ||| ||||| | |||||||| ||||| || | ||| ||||| || || |||||| || Sbjct 596 TGCAAAGATCAAACGTTGTTGATCAGGTGGGATTCCCTCCTTATCTTGAATCTTTGCCTT 655 Query 211037 CACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGT 211096 || || || || || || || |||||| || | |||||| |||||||| || | ||| Sbjct 656 AACATTCTCAATTGTATCTGAAGGTTCAACTTCCAAAGTGATAGTCTTTCCTGTCAAAGT 715 Query 211097 CTTTACAAACACCTGCAT 211114 ||| ||||| | |||||| Sbjct 716 CTTGACAAAAATCTGCAT 733 >seq102 Length=1270815 Score = 134 bits (148), Expect = 3e-26 Identities = 163/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210896 AAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCT 210955 |||||| | || | || | ||||||||| || ||||| || || || | || || || Sbjct 544534 AAGTCTCAATACTAAATGCAAAGTGGACTCCTTCTGGATATTGTAGTCAGATAGAGTTCT 544593 Query 210956 TCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTC 211015 |||||||||| ||||| || || ||||| || || ||||| |||||||||| || || Sbjct 544594 ACCATCTTCCAATTGCTTTCCAGCAAAGATCAGACGCTGTTGATCAGGAGGAATGCCCTC 544653 Query 211016 CTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGT 211075 ||| |||||||||||| || || || || || || || || |||||| || | || Sbjct 544654 CTTATCCTGGATCTTTGCCTTTACATTCTCAATAGTATCGGAAGGTTCAACTTCCAATGT 544713 Query 211076 GATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 ||| |||||||| || | ||| || ||||| | ||||| || Sbjct 544714 GATGGTCTTTCCTGTTAAAGTTTTGACAAAAATTTGCATCTT 544755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159150232655435