Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001593465.1_202016-03- 17] 119 sequences; 9,107,739 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq53 131 1e-25 seq88 127 1e-24 seq102 100 2e-16 >seq53 Length=978 Score = 131 bits (144), Expect = 1e-25 Identities = 160/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||||||||| || | || ||||| || |||||| | |||||||| | | Sbjct 505 ATGCAGATTTTCGTTAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTTGAACCTTCA 446 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| |||| |||| | || || || ||||| | || || ||||| Sbjct 445 GATACAATTGAGAATGTTAAGGCAAAGA-TTCAGGATAAGGAAGGAATCCCACCTGATCA 387 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| ||||| || ||||| || |||||| | || || | | ||| | |||||||| Sbjct 386 ACAACGTTTGATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTCTGATTACAA 327 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 ||| |||||||||||||| ||||| ||||| || || Sbjct 326 CATTCAAAAAGAGTCCACTTTACACTTAGTCTTGAG 291 Score = 131 bits (144), Expect = 1e-25 Identities = 160/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||||||||| || | || ||||| || |||||| | |||||||| | | Sbjct 961 ATGCAGATTTTCGTTAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTTGAACCTTCA 902 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| |||| |||| | || || || ||||| | || || ||||| Sbjct 901 GATACAATTGAGAATGTTAAGGCAAAGA-TTCAGGATAAGGAAGGAATCCCACCTGATCA 843 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| ||||| || ||||| || |||||| | || || | | ||| | |||||||| Sbjct 842 ACAACGTTTGATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTCTGATTACAA 783 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 ||| |||||||||||||| ||||| ||||| || || Sbjct 782 CATTCAAAAAGAGTCCACTTTACACTTAGTCTTGAG 747 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || || | || ||||| || |||||| | |||||||| | | Sbjct 277 ATGCAGATTTTTGTCAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTTGAACCTTCA 218 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| |||| |||| | || || || || || | || || ||||| Sbjct 217 GATACAATTGAGAATGTTAAGGCAAAGA-TTCAAGATAAGGAGGGAATCCCACCTGATCA 159 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| ||||| || ||||| || |||||| | || || | | ||| | || ||||| Sbjct 158 ACAACGTTTGATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTCTGACTACAA 99 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| ||||||||||| || ||||||||||| || ||| | |||| || Sbjct 98 CATTCAAAAAGAGTCTACTTTACATTTAGTATTGAGGCTCAGAGGTGG 51 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || || | || ||||| || |||||| | |||||||| | | Sbjct 733 ATGCAGATTTTTGTCAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTTGAACCTTCA 674 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| |||| |||| | || || || || || | || || ||||| Sbjct 673 GATACAATTGAGAATGTTAAGGCAAAGA-TTCAAGATAAGGAGGGAATCCCACCTGATCA 615 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| ||||| || ||||| || |||||| | || || | | ||| | || ||||| Sbjct 614 ACAACGTTTGATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTCTGACTACAA 555 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| ||||||||||| || ||||||||||| || ||| | |||| || Sbjct 554 CATTCAAAAAGAGTCTACTTTACATTTAGTATTGAGGCTCAGAGGTGG 507 >seq88 Length=50168 Score = 127 bits (140), Expect = 1e-24 Identities = 169/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || ||||||||||| ||||| || | || ||||| || |||||| | |||||||| | Sbjct 13569 AATATGCAGATTTTTGTTAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTTGAACCT 13628 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | || || |||| ||| |||| | ||| ||| || || ||||| | || || || Sbjct 13629 TCAGATACAATTGAGAATGTTAAGGC-AAAGATTCAGGATAAGGAAGGAATCCCACCTGA 13687 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 |||||| ||||| || ||||| || |||||| | || || | | ||| | ||||| Sbjct 13688 TCAACAACGTTTGATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTCTGATTA 13747 Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 |||||| |||||||||||||| ||||| ||||| || || | |||| ||| Sbjct 13748 CAACATTCAAAAAGAGTCCACTTTACACTTAGTCTTGAGACTTAGAGGCGGA 13799 >seq102 Length=1270815 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || ||||| ||||| || ||||| | || ||||| || ||||| | |||||||| | Sbjct 544755 AAGATGCAAATTTTTGTCAAAACTTTAACAGGAAAGACCATCACATTGGAAGTTGAACCT 544696 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | || ||| |||| | |||| ||| || || || || || | || || ||| Sbjct 544695 TCCGATACTATTGAGAATGTAAAGGCAAAGATCCAGGATAAGGAGGGCATTCCTCCTGAT 544636 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 ||||||||| | || ||||| || || ||| ||||||| | | ||| || || ||| Sbjct 544635 CAACAGCGTCTGATCTTTGCTGGAAAGCAATTGGAAGATGGTAGAACTCTATCTGACTAC 544576 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 || || || || |||||||| || |||||||| || || Sbjct 544575 AATATCCAGAAGGAGTCCACTTTGCATTTAGTATTGAG 544538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338009109780452