Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001593465.1_202016-03- 17] 119 sequences; 9,107,739 total letters Query= NC_030240.1 Length=128058 Score E Sequences producing significant alignments: (Bits) Value seq88 82.4 6e-11 >seq88 Length=50168 Score = 82.4 bits (90), Expect = 6e-11 Identities = 166/242 (69%), Gaps = 6/242 (2%) Strand=Plus/Minus Query 100999 GTTATTACTATTGCCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAAT 101058 ||| |||| ||| ||||||| | ||| || || | ||| ||||| || ||||||||||| Sbjct 13809 GTTCTTAC-ATT-CCGCCTCTAAGTCTCAAGACTAAGTGTAAAGTGGACTCTTTTTGAAT 13752 Query 101059 ATTGTAATCGGCCATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTG 101118 |||||||| | | |||| | ||| || |||||||| || ||| | || | | ||| Sbjct 13751 GTTGTAATCAGAGAGAGTTCTACCATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTG 13692 Query 101119 TTGGTCTACGGGCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACATCGGCCACCGTCTC 101178 ||| || || | ||||| || || ||| ||| || |||| | | || || Sbjct 13691 TTGATCAGGTGGGATTCCTTCCTTATCCTGAATCTTTGCCTTAACATTCTCAATTGTATC 13632 Query 101179 TGTGGACGTT--GTTTCGACGGTAATAGTTTTGCCCGTCAATGTTTTAATAAAAATTTGC 101236 || | ||| ||| | || ||||| || || ||||| || |||| |||||| ||| Sbjct 13631 --TGAAGGTTCAACTTCCAAAGTGATAGTCTTTCCTGTCAAAGTCTTAACAAAAATCTGC 13574 Query 101237 AT 101238 || Sbjct 13573 AT 13572 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 409660205863821