Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001593475.1_202016-03- 17] 156 sequences; 9,156,091 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq153 315 1e-80 seq15 214 3e-50 >seq153 Length=380987 Score = 315 bits (348), Expect = 1e-80 Identities = 1199/1858 (65%), Gaps = 42/1858 (2%) Strand=Plus/Minus Query 78717 TGTGAATTGAATGGGAGCGGAT-GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTA 78775 ||| ||||| ||||| ||| | ||| || || | | ||| || || || ||||||| Sbjct 233964 TGTAAATTGTATGGG-GCGTGTCGCGCTTTGGGTCCTCAAATAATAAATGCCTGTTTTTA 233906 Query 78776 GACCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTA 78835 |||| |||| || || ||||||||| | || || | | | | | || | | | Sbjct 233905 GACCTTTTTTCCAACCATAAAAATGCATAGATGATAACTTTGCAAAGTTAGCATTTTCCA 233846 Query 78836 TATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTA 78895 ||||||| |||| |||||| |||| | | | ||||| ||||||||||| | | Sbjct 233845 TATGGATGTTCAAAGATTGCGATTGACAAACATATGGACCCCTATCTGCAGCCATATCAA 233786 Query 78896 TGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAA-CTCGCTTAATATCTTCTGGA 78954 | | |||||||| |||||||| | ||| ||||||| ||| | || |||| || ||| Sbjct 233785 TTACTGTCTTTTGCTTGATTTCCCATACAGTCTTATAAAGCTCACGTA-TATCCTCCGGA 233727 Query 78955 AGGTT---TGTATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCTTCA 79011 | | | |||| ||||| ||| || ||| ||||| | | ||| | | ||| Sbjct 233726 ATTGTAAGTATATTTTGAATACTGCCATTATTTGCAATAATATTCTGCTTAAGCCTATCA 233667 Query 79012 TTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCT 79071 | |||||| ||| |||| | | || | |||||||| ||||| || || Sbjct 233666 TCCCATAACCCAAGCTCTAGTAAATCATTTAGCAAGTGCGGATTTACTACAAAGAACTCA 233607 Query 79072 CCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTATTT 79131 ||||| | ||| || ||| ||||| || ||| |||| || | ||||| || Sbjct 233606 CCAGATAGTACCCTACGATGATAAATGTTCGAGGTGAATGGCTCAAAACTCTCATTGTTA 233547 Query 79132 CCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGA 79191 || |||||||| | ||| ||||| |||||||| || | | ||||| | ||| | || | Sbjct 233546 CCTAAAATTTGTGAAGTGGATGCTGTTGGCATTGGAGATATCAATAGAGAATTACGAATA 233487 Query 79192 CCGTATGATCTGATTTTATCTTTTAGAGATTCCCAATCCCAAAGATCAGAC---GGGACA 79248 || ||| || ||||||| || || |||||||| ||||| |||| || | Sbjct 233486 CCATATTTGGAAATCCTATCTTTAAGCGAATCCCAATCACAAAGTCCAGAGTCTGGTGTA 233427 Query 79249 ACATTCCAAAGATCATATTGTAGAATACCGTTACTAGCGTATGATCCTGTGTATGTTTCA 79308 || ||| | |||| |||||| |||||| ||||| || || || | |||||||| Sbjct 233426 ACTCCCCACATATCAAATTGTAAAATACCCTTACTCGCAGGCGAACCGGAATATGTTTCG 233367 Query 79309 TAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAATAAATGGTT 79368 || || || | ||||| || | ||||| || || || | ||| | ||||| || | Sbjct 233366 TATGGACCATATTTTTCTGCAAGCTCACAGCTAGCATCGAGAGCTGCATAATAGATAACT 233307 Query 79369 TCGAAAATCTTCTTATTGAGATCTTGTGCTTCT--AGGCTATCAAATGG-ATAATTTAAG 79425 || || || | ||||| | | | ||| | || || | |||| ||| ||| Sbjct 233306 TCAAAGATTTGTTTATTTAACTTCTTAGCTCCCTCAGACT--CGTATGGCATACG--AAG 233251 Query 79426 -AGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATT 79484 | || || |||||| | ||||||| ||||| || | || | |||||| ||| Sbjct 233250 CATCATGAAACAGTCTGCGAGCCCTTGAATGCCAATCCCCAATGGACGATGTCTTAAATT 233191 Query 79485 AGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTCCT 79544 || || | |||| || || |||||| || || || | |||||| | |||||| Sbjct 233190 CGAGTTTGTACATTCTTTAAGAGAATAATATCCAACGTCAATCAATTTATTCAAATTCCT 233131 Query 79545 GACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCGTCCATCTATT----- 79599 || || || || || |||| || ||||||||| |||| |||| Sbjct 233130 CGTAATCACCTTCGTAACTTCTTTTAACTTATCAAAATCAAA-CGTCTTGTTATTTTTAT 233072 Query 79600 --ACAAACATGTTCAACGCGAC-AGATGCCAGATTACAAACGGCTACCTCATTAGCATCC 79656 || ||| | | || || | ||| ||||||||||||||||| || || | | | | Sbjct 233071 CAACGAACTT-TGGAAGGCCAATAGACGCCAGATTACAAACGGCAACTTCGTC--CTTGC 233015 Query 79657 --GCATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTT 79714 | |||| ||| ||||| ||||| | |||||| | ||| ||||| ||||||| | Sbjct 233014 TAGTGTATTCTATGATTTCTGTGCATAAGTTACTTGAAACAATAGTTCCCAAATTTTTCT 232955 Query 79715 GATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCT 79774 | ||||| || | || ||||| |||||| ||| || || || || || ||||| | Sbjct 232954 GGTTACTTTTGCTATTTGCAGCATCTTTATAACAAATAAATGGTGTCCCCGTCTCAATTT 232895 Query 79775 GAGATTCTATAATCGCTTTCCAGACGACTC-GAGCCTTTATTATAGACTTGTATCTCTTT 79833 ||| | || || ||| | | || | || || || | | | | | Sbjct 232894 GAGCCTGTAAGATTAAGAACCAAA-GTTTCTGCGCTTTCATCGTTTTCCTTCCACGGCCT 232836 Query 79834 TCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCA 79893 | | | || || | | ||||| | || || || ||||||||||| | ||||| Sbjct 232835 TGTTTCTCATACTCTTCATATAGCTTCTTAAAATCATCGCCCCAAACATCTTGCAATCCC 232776 Query 79894 GGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAG 79953 ||||| || || ||||| | | ||| ||| ||| | || |||| || ||| || Sbjct 232775 CTGCATTCATCTGGGCACATTAGAGTCCAATCTTGATCCTTCTCAACTCTTTCCATGAAC 232716 Query 79954 AGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTA 80013 |||||||||| |||||| || ||| ||||| | ||| ||| || ||||| | Sbjct 232715 AGATCAGGAACCCAAAGGGCAGGAAAGAGATCGCGACATCTCATCTCTTCCTTTCCATGA 232656 Query 80014 TTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCC 80073 ||||| ||| || | ||| | | || |||| ||||| |||||||| || || || Sbjct 232655 TTCTTCCTAATTTCAATAAACTCTACAACATCAACGTGCCATGGTTCCAAATAAATTGCA 232596 Query 80074 ATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACT 80133 || | || || || ||| || ||||| || || ||||| |||| ||||||||| Sbjct 232595 ATGGCACCTTTACGCTTCCCTCCACCTTGATCAATATACCTAGCAGTGTCATTATAAACG 232536 Query 80134 CTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTG 80193 | || ||| ||||| | ||||| ||| | ||||| || || ||||| ||| | Sbjct 232535 CGCAGCATCGGAATTAATCCATTAGATCTCCCATTTGTTCCTCGAATATATGAACCAGTT 232476 Query 80194 GCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCAT 80253 | | ||||||||| | || | || | || ||||| | ||| || ||||||| Sbjct 232475 CCTCTAATATTACTTACTGCCACCCCAAGGCCACCTGCAGTCTTACTAATGTTTGCGCAT 232416 Query 80254 CGTTTTAACGTATCATAGATGCCCTCTATGCTATCATC---AATCATGTTAAGTAGAAAA 80310 ||| || ||| |||| || | ||| ||| || |||| || |||| |||| Sbjct 232415 TTAGTTAGTGTGTCAAAGATACCGTTTATTGAATCTTCTGGAATCCTG---AGTAAAAAA 232359 Query 80311 CAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTA 80370 || |||||||| | || || || | |||||| | || || | || || ||| Sbjct 232358 CAAGATGACATTTGAGGTCGCGGCGTGCCTGAATTAAAGAGTGTGGGTGTTGCATGAGTA 232299 Query 80371 AACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGA 80430 || |||||| || | | | || || |||| || | ||| ||||| | |||| Sbjct 232298 AAATATTTTTGCGATAACAACTCATATGTTTCAAGTGCAGCTTCAATATCACCACAATGA 232239 Query 80431 ATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATT 80490 || || | || ||||| | | || || |||||||| || | ||||| | ||| Sbjct 232238 ATACCACAAGAAACCCGCATCAGAAGATGTTGTGGTCTTTCCACAACTTTGTTGTCAATT 232179 Query 80491 TTCAACAAG-TAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCT 80547 || || ||| || ||| |||| | |||||| || ||||||| | ||| ||| ||| Sbjct 232178 TT-AAGAAGATAGGATCTTTCTAGAGTTTTGAAGGCAAAATAATCATATTCAAAATCT 232122 >seq15 Length=98471 Score = 214 bits (236), Expect = 3e-50 Identities = 587/881 (67%), Gaps = 45/881 (5%) Strand=Plus/Plus Query 49645 TCTTCTTGA--GAC-ATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAA 49701 || |||||| ||| |||||||| |||| |||||||| || | |||||||| || Sbjct 53159 TCATCTTGATTGACCATAACTCCAGCCATTTGATATTCACCAACTCTCTTTTCGAAGAAG 53218 Query 49702 TTAGTTTTTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAA 49761 |||||||| |||| | ||| ||| ||||| ||||||| ||||| | ||| || || Sbjct 53219 TTAGTTTTACCTTGAAGTGAAATAAGGTCCATCCAATCAAAAGGATTAGAAACGTTGTAG 53278 Query 49762 AtttttttAAATCCCAATTCAGAAATCAATCTATCCGCGACAAATTCTATATATGTTTTC 49821 |||||| || |||| || ||| |||||||| || |||||||| |||||| | Sbjct 53279 ATTTTTGGAATATCCAAGGCAAAAAGTAATCTATCAGCAACAAATTCAATATATTGGGCC 53338 Query 49822 ATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGT 49881 || | | | ||||| || ||||| | ||| ||||||| || |||||| | | | Sbjct 53339 ATAAGTCTTGAGTTCATACCAATAAGATCAACAGGAAGAGAGTCACAAAGAAAGTTTCTT 53398 Query 49882 TCAATGGATACCGCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAAT 49941 |||| || || |||| ||| ||| | || | | || || | | ||| Sbjct 53399 TCAACTTCAACAGCTTCTGATAT----GATTTG-----TTGTACTCTAGGAGCTGGTAAT 53449 Query 49942 --AAATGT-------TTAAACATCAAACATGCGAAATC-GCAGTGCAGACCCTCGTCTCT 49991 |||| | ||| | || ||||| || || || ||| || ||||| || || | Sbjct 53450 TTAAATTTAAGGGCTTTATATATTAAACAAGCAAAGTCAGCA-TGGAGACCTTCATCACG 53508 Query 49992 ACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAA 50051 |||||| ||||| || ||||| |||||||| ||||| || ||||| |||||||||||||| Sbjct 53509 ACTAATAAGTTCATTAGAAAATGTGAGTCCAGGCATAAGTCCACGTTTTTTAAGCCAAAA 53568 Query 50052 TATGGACGCAAATG-ACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTC 50110 || | | |||| | |||||||| | |||||||| || || || ||| || || Sbjct 53569 AATTG-CACAAAAGCTACCAGAAAATAGAATTCCTTCAACAGCACAGAATCCAATAATTC 53627 Query 50111 TCTCTCCATAA-CTGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTT 50169 | || || || | | | | || ||||| || ||||| || || |||||||| Sbjct 53628 TTTCAGCAAAAGATCGTTCAG-AATTCATCCATTTAGTTGCCCATTCTGCTTTCTTTTTA 53686 Query 50170 ACACAAGGCATCGTT----TCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTT 50225 ||| || || | || || | |||||| | ||| ||| |||| | Sbjct 53687 ACA----GCTTCAATATGAGAAATTGCTTCAAAGAGCATTTGACGTTCTTTAATATCAGT 53742 Query 50226 AACATAAGTATCGATCA--AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATC 50283 || ||| |||| || | || || ||| |||| ||| || | |||||| | ||| Sbjct 53743 AATATATCTATCAATAAGTAATGA--ATAAGTTTCACTATGTATTTGTTCAATAGACATT 53800 Query 50284 TGAAATCCGTAGAAACA-TCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCAGC 50342 ||||| | || | ||| ||| || || | || || | |||| || || | | || Sbjct 53801 TGAAAAGCATA-ATACATTCTGGCTTCTGGTATTTGTATTTCTCTAAGGAAATTTACTGC 53859 Query 50343 TAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAA 50402 ||| ||||| | || || || ||||| || ||||| || || || || | ||| ||||| Sbjct 53860 TAAGTTTTCCATAACAATGCCATCACTTGCAGCAAAGAATGCTAAGACGTATTTGATAAA 53919 Query 50403 ATGTTTTTCGTTGGGTGTT--AGTTTATTCCAATCATTGATATCTTTAGATATATCTACT 50460 |||| |||| |||| || || | | |||||| | |||||| | || ||| | Sbjct 53920 ATGTCTTTC--AGGGTCTTTAAGACTTTCCCAATCTCTAGTATCTTGACTTAGATCAATC 53977 Query 50461 TCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACAT 50501 ||||| |||||||||||| || || ||||||||||| Sbjct 53978 TCTTCAGTAACCCAAAATGATGCTTCAGCTTTTTTATACAT 54018 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718267399375840