Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001593475.1_202016-03- 17] 156 sequences; 9,156,091 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq15 269 3e-67 >seq15 Length=98471 Score = 269 bits (298), Expect = 3e-67 Identities = 597/875 (68%), Gaps = 39/875 (4%) Strand=Plus/Plus Query 13582 TTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTT 13641 |||||||||||| |||||| ||||| ||||||||||||||||||| ||||| ||| | Sbjct 53187 TTTGATATTCACCAACTCTCTTTTCGAAGAAGTTAGTTTTACCTTGAAGTGAAATAAGGT 53246 Query 13642 CCATAAAATCAAATGGATTTATTGACATAA-ACACTTTATCACAACCTAGTTCTAATAGT 13700 |||| ||||||| ||||| | || | | | ||| | | | | | || ||| Sbjct 53247 CCATCCAATCAAAAGGATT-AGAAACGTTGTAGATTTTTGGAATATCCAAGGCAAAAAGT 53305 Query 13701 AATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAA-TTCATACCTATTAG 13759 ||||||||||||| ||| ||||||||||| | ||| || || | |||||||| || || Sbjct 53306 AATCTATCAGCAACAAATTCAATATATTGGGCCAT-AAGTCTTGAGTTCATACCAATAAG 53364 Query 13760 TTTTACAGGAATTATATTGGTTAA-AAATTCTTTTTCTATAGACACAGCCTCTTTTATAA 13818 | ||||||| | | | || ||| | | |||| | ||||| ||| ||| | Sbjct 53365 ATCAACAGGAAG-AGAGTCACAAAGAAAGTTTCTTTCAACTTCAACAGCTTCTGATATGA 53423 Query 13819 TAATTGTAATAATCTCATTAGAAGGAGG------ATATTTTAGATGTTTAAAAATTAAAC 13872 | |||| || ||| || || || | |||| || |||| | ||||||| Sbjct 53424 T--TTGTTGTACTCT----AGGAGCTGGTAATTTAAATTTAAGGGCTTTATATATTAAAC 53477 Query 13873 ACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATC 13932 | ||||| ||| ||| || || ||||| | |||||||||||| || |||||||| | || Sbjct 53478 AAGCAAAGTCAGCATGGAGACCTTCATCACGACTAATAAGTTCATTAGAAAATGTGAGTC 53537 Query 13933 CTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATA 13992 | ||||| | ||| |||||||| | |||||| |||||| ||| || ||||| | | Sbjct 53538 CAGGCATAAGTCCACGTTTTTTAAGCCAAAAAATTGCACAAAAGCTACCAGAAAATAGAA 53597 Query 13993 TTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATA 14052 |||| ||||| ||| || | || | || ||| |||| ||| || ||| | Sbjct 53598 TTCCTTCAACAGCACAGAATCCAATAATTCTTTCAGCAAAAGATCGTTCAGAATTC---A 53654 Query 14053 TCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAA 14112 ||||||| | |||||||| | ||| ||||||| | || || ||| || | || Sbjct 53655 TCCATTTAGTTGCCCATTCTGCTTTCTTTTTAACAGCTTCAATATGAGAAATTGCTTCAA 53714 Query 14113 ATA-AATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATT 14171 | | || | | | |||||| || | ||| ||| ||||||||||||| ||| || Sbjct 53715 AGAGCATTTGACGT-TCTTTAATATCAGTAATATATCTATCAATAAGTAATGAATAAGTT 53773 Query 14172 TCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCAT 14231 ||| ||||| | ||| |||| || |||||| ||||| | ||| ||||| | | Sbjct 53774 TCACTATGTATTTGTTCAATAGACATTTGAAAAGCATAATACATTCTGGCTTCTGGTATT 53833 Query 14232 TGTACTTC-CGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGC 14290 |||| ||| | | |||| || | || || ||||| |||| || |||||||| || || Sbjct 53834 TGTATTTCTCTAAGGAAAT-TTACTGCTAAGTTTTCCATAACAATGCCATCACTTGCAGC 53892 Query 14291 AAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCA---TTGTTGAGTTTTTTCCA 14347 ||| ||||| || | || ||| ||||| || || |||| | || || ||| ||| Sbjct 53893 AAAGAATGCTAAGACGTATTTGATAAA--ATGTCT-TTCAGGGTCTTTAAGACTTTCCCA 53949 Query 14348 ATC----GGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAG 14403 ||| | || |||||| |||| ||||| ||| |||||| || ||| Sbjct 53950 ATCTCTAGTATCTTGACTTAGATCAATCT-CTTCAGTAAC---CCAAAATGATGCTTCAG 54005 Query 14404 CTTTTTTATACATTACCCATATTTCTTTATATAAT 14438 |||||||||||||| ||| || |||||| |||| Sbjct 54006 CTTTTTTATACATTGACCAAATATCTTTAATTAAT 54040 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479727064530400