Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001593475.1_202016-03- 17] 156 sequences; 9,156,091 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq15 248 8e-61 >seq15 Length=98471 Score = 248 bits (274), Expect = 8e-61 Identities = 593/875 (68%), Gaps = 39/875 (4%) Strand=Plus/Plus Query 13370 TTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTT 13429 |||||||||||| |||||| ||||| || |||||||||||||||| ||||| ||| | Sbjct 53187 TTTGATATTCACCAACTCTCTTTTCGAAGAAGTTAGTTTTACCTTGAAGTGAAATAAGGT 53246 Query 13430 CCATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAATA 13489 |||| |||| || ||||| | | | | ||| | | | | | || | || Sbjct 53247 CCATCCAATCAAAAGGATTAGAAACGTTGTAGATTTTTGGAATATCCAAGGCAAAAAGTA 53306 Query 13490 ATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAA-TTCATACCTATTAGT 13548 |||||||||||| ||| ||||||||||| | ||| || || | |||||||| || || Sbjct 53307 ATCTATCAGCAACAAATTCAATATATTGGGCCAT-AAGTCTTGAGTTCATACCAATAAGA 53365 Query 13549 TTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATA 13608 | ||||||| | | | ||| | | |||| | ||||| || ||| || Sbjct 53366 TCAACAGGAAGAGAGTCACAAAGAAAGTTTCTTTCAACTTCAACAGCTTCTGATATGATT 53425 Query 13609 ATCTTAATAATGTCATTAGAAGGAGG------ATATTTTAGATGTTTAAAAATTAAACAC 13662 | || || | | || || || | |||| || |||| | |||||||| Sbjct 53426 -TGTTG-TACTCT----AGGAGCTGGTAATTTAAATTTAAGGGCTTTATATATTAAACAA 53479 Query 13663 GCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCT 13722 ||||| ||| ||| || || ||||| | |||||||||||| || |||||||| | ||| Sbjct 53480 GCAAAGTCAGCATGGAGACCTTCATCACGACTAATAAGTTCATTAGAAAATGTGAGTCCA 53539 Query 13723 GGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGAT-CCGGAAAAGAATAT 13781 ||||| | ||| |||||||| | |||||| |||||| | || | | || ||||| | || Sbjct 53540 GGCATAAGTCCACGTTTTTTAAGCCAAAAAATTGCA-CAAAAGCTACCAGAAAATAGAAT 53598 Query 13782 TCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATAT 13841 ||| ||||| ||| || | || | || ||| |||| ||| || || || Sbjct 53599 TCCTTCAACAGCACAGAATCCAATAATTCTTTCAGCAAAAGATCGTTCAGAATT---CAT 53655 Query 13842 CCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAA 13901 |||||| | |||||||| | ||| ||||||| | || || ||||| | || Sbjct 53656 CCATTTAGTTGCCCATTCTGCTTTCTTTTTAACAGCTTCAATATGAGAAATTGCTTCAAA 53715 Query 13902 TA-AATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTT 13960 | || | | | |||||| || | ||| ||| ||||||||||||| ||| ||| Sbjct 53716 GAGCATTTGACGT-TCTTTAATATCAGTAATATATCTATCAATAAGTAATGAATAAGTTT 53774 Query 13961 CAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATT 14020 || ||||| | ||| |||| || |||||| ||||| | ||| ||||||| || Sbjct 53775 CACTATGTATTTGTTCAATAGACATTTGAAAAGCATAATACATTCTGGCTTCTGGTATTT 53834 Query 14021 GTACCTC-CGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCA 14079 ||| || | | |||| || |||| |||||||| ||||||| |||||||| || ||| Sbjct 53835 GTATTTCTCTAAGGAAAT-TTACTGCTAAGTTTTCCATAACAATGCCATCACTTGCAGCA 53893 Query 14080 AAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCA---TTGTTGAGTTTTTTCCAA 14136 || ||||| || | || ||| ||||| || || |||| | || || ||| |||| Sbjct 53894 AAGAATGCTAAGACGTATTTGATAAA--ATGTCT-TTCAGGGTCTTTAAGACTTTCCCAA 53950 Query 14137 TCGGCTA-AATC----CTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAG 14191 || ||| ||| |||||| |||| ||||| ||| |||||| || ||| Sbjct 53951 TC-TCTAGTATCTTGACTTAGATCAATCT-CTTCAGTAAC---CCAAAATGATGCTTCAG 54005 Query 14192 CTTTTTTATACATTACCCATATTTCTTTATATAAT 14226 |||||||||||||| ||| || |||||| |||| Sbjct 54006 CTTTTTTATACATTGACCAAATATCTTTAATTAAT 54040 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478587866751840