Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001593475.1_202016-03- 17] 156 sequences; 9,156,091 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq139 105 4e-18 seq151 93.3 3e-14 >seq139 Length=542781 Score = 105 bits (116), Expect = 4e-18 Identities = 168/239 (70%), Gaps = 14/239 (6%) Strand=Plus/Minus Query 33141 CACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAG 33200 |||||||||| | | ||| || |||||||| || ||||| || || |||||||| |||| Sbjct 271508 CACCGCCTCTAAGTCTCAATACTAAATGCAAAGTGGACTCCTTCTGGATATTGTAGTCAG 271449 Query 33201 ACAAATTGAGTTGG----TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCC 33256 | | ||||| || ||||||||||||||| ||| || | ||| || || || Sbjct 271448 ATA----GAGTTCTACCATCTTCCAATTGCTTTCCAGCAAAGATCAGACGCTGTTGATCA 271393 Query 33257 GTGGGTATGCCTTCTTTTTCGCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTG 33313 | || ||||| || || || ||| |||| |||| | | ||| || ||| Sbjct 271392 GGAGGAATGCCCTCCTTATCCTGGATCTTTGCCT---TTACATTCTCAATAGTATCGGAA 271336 Query 33314 GGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 |||| ||| |||| || || || ||||| || | |||||| || ||||||||||| || Sbjct 271335 GGTTCAACTTCCAATGTGATGGTCTTTCCTGTTAAAGTTTTGACAAAAATTTGCATCTT 271277 >seq151 Length=91942 Score = 93.3 bits (102), Expect = 3e-14 Identities = 162/234 (69%), Gaps = 14/234 (6%) Strand=Plus/Minus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 |||||||| | | ||| || || || || || ||||||||||| || ||||||||||| Sbjct 55612 CCGCCTCTAAGTCTCAAGACTAAGTGTAAAGTGGACTCTTTTTGAATGTTGTAATCAGAG 55553 Query 33203 AAATTGAGTT----GGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGT 33258 | ||||| || || ||||| ||||| ||| || |||||||| || || | Sbjct 55552 A----GAGTTCTACCATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGG 55497 Query 33259 GGGTATGCCTTCTTTTTCGCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGG 33315 || || ||||| || || |||| ||| || || | | ||| || || || Sbjct 55496 TGGGATTCCTTCCTTATCCTGAATCTTTGCC---TTAACATTCTCAATTGTATCTGAAGG 55440 Query 33316 TTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || ||| |||| ||| || || ||||| || | ||| || |||||||| ||||| Sbjct 55439 TTCAACTTCCAAAGTGATAGTCTTTCCTGTCAAAGTCTTAACGAAAATCTGCAT 55386 Score = 87.8 bits (96), Expect = 1e-12 Identities = 164/239 (69%), Gaps = 14/239 (6%) Strand=Plus/Minus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| ||||| | | ||| || || || || || ||||||||||| || ||||||||||| Sbjct 55157 ACCACCTCTAAGTCTCAAGACTAAGTGTAAAGTGGACTCTTTTTGAATGTTGTAATCAGA 55098 Query 33202 CAAATTGAGTT----GGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCG 33257 | ||||| || || ||||| ||||| ||| || |||||||| || || | Sbjct 55097 GA----GAGTTCTACCATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAG 55042 Query 33258 TGGGTATGCCTTCTTTTTCGCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGG 33314 || || ||||| || || |||| ||| || || | | ||| || || | Sbjct 55041 GTGGGATTCCTTCCTTATCCTGAATCTTTGCC---TTAACATTCTCAATTGTATCTGAAG 54985 Query 33315 GTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTTT 33373 ||| ||| |||| ||| || || ||||| || | ||| || || ||||| ||||| ||| Sbjct 54984 GTTCAACTTCCAAAGTGATAGTCTTTCCTGTCAAAGTCTTAACAAAAATCTGCATATTT 54926 Score = 86.0 bits (94), Expect = 4e-12 Identities = 161/235 (69%), Gaps = 14/235 (6%) Strand=Plus/Minus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| ||||| | || ||| || ||||| || || ||||||||||| || ||||| ||||| Sbjct 55385 ACCACCTCTGAGCCTCAATACTAAATGTAAAGTAGACTCTTTTTGAATGTTGTAGTCAGA 55326 Query 33202 CAAATTGAGTT----GGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCG 33257 | ||||| || || ||||| ||||| ||| || |||||||| || || | Sbjct 55325 GA----GAGTTCTACCATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAG 55270 Query 33258 TGGGTATGCCTTCTTTTTCGCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGG 33314 || || || || || || |||| ||| || || | | ||| || || | Sbjct 55269 GTGGGATTCCCTCCTTATCTTGAATCTTTGCC---TTAACATTCTCAATTGTATCTGAAG 55213 Query 33315 GTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||| ||| |||| ||| || || ||||| || | ||| || || ||||| ||||| Sbjct 55212 GTTCAACTTCCAAAGTGATAGTCTTTCCTGTCAAAGTCTTGACAAAAATCTGCAT 55158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318776993924088